CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04117	Soybean	cytosol, nucleus, plasma membrane	98.34	98.34
KRH28066	Soybean	cytosol	61.83	83.24
KRH77373	Soybean	endoplasmic reticulum	82.57	82.57
VIT_02s0154g00500.t01	Wine grape	cytosol, nucleus, plasma membrane	72.2	73.11
KRH65384	Soybean	cytosol	71.78	71.78
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	63.07	71.7
KRH76164	Soybean	endoplasmic reticulum	70.95	70.95
Solyc08g078690.2.1	Tomato	cytosol	64.73	70.27
VIT_13s0106g00400.t01	Wine grape	cytosol	39.42	69.85
KRH28185	Soybean	cytosol, golgi, nucleus	40.66	44.75
KRH04206	Soybean	cytosol	39.83	43.24
KRH57501	Soybean	plasma membrane	36.93	42.18
KRH50932	Soybean	cytosol	48.55	39.66
KRH77304	Soybean	plasma membrane, vacuole	40.66	39.36
KRH02189	Soybean	cytosol	48.13	39.32
KRH11275	Soybean	cytosol	42.32	36.69
KRG92793	Soybean	cytosol	41.49	20.79
KRH34006	Soybean	cytosol	42.74	19.43

Protein Annotations

EntrezGene:100527687	Gene3D:2.60.40.10	MapMan:20.7.1	EMBL:ACUP02002830	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G058700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	UniProt:I1K0P5	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
EnsemblPlants:KRH57391	ProteinID:KRH57391	ProteinID:KRH57391.1	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix
UniParc:UPI00023C4CC4	InterPro:VAP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:5439150..5443843

Molecular Weight (calculated)

26464.8 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.464

Length

241 amino acids

Sequence
(BLAST)

001: MSTGELLNIE PLELKFPFEL KKQISCSLQL SNKTDSYVAF KVKTTNPKKY CVRPNTGIVT PRSTCDVIVT MQAQKEAPAD MQCKDKFLLQ SVKTVDGTSP
101: KDITADMFNK EAGHVVEECK LRVLYVSPPQ PPSPVPEGSE EGSSPRGSVS ENGNANGSDF TQAARGFTER PESQDKSAEA RALISRLTEE KNNAIQQNSK
201: LHQELELLKR EGNKSRGGVS FVIVVLIGLL GIIMGYLMKK T

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.