CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77304	Soybean	plasma membrane, vacuole	94.52	83.13
KRH57501	Soybean	plasma membrane	73.52	76.3
KRH04206	Soybean	cytosol	77.17	76.13
PGSC0003DMT400067515	Potato	nucleus	68.95	68.64
Solyc08g078000.2.1	Tomato	nucleus	68.95	68.64
Solyc08g007200.2.1	Tomato	unclear	65.3	66.51
PGSC0003DMT400052797	Potato	cytosol	64.84	66.05
CDY28969	Canola	cytosol	64.84	65.14
CDY40565	Canola	cytosol	64.84	65.14
AT5G47180.1	Thale cress	cytosol	65.3	65.0
Bra022110.1-P	Field mustard	cytosol	64.38	64.68
CDX77746	Canola	cytosol	63.93	64.22
CDY33519	Canola	cytosol	63.47	63.76
Bra022111.1-P	Field mustard	cytosol	63.01	62.73
CDY43438	Canola	cytosol	63.01	62.73
Bra024958.1-P	Field mustard	cytosol	62.1	62.39
Bra017499.1-P	Field mustard	cytosol	62.56	62.27
CDY25982	Canola	cytosol	62.56	62.27
GSMUA_Achr11P...	Banana	cytosol	59.36	56.52
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	57.99	54.74
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	57.99	54.74
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	57.99	54.74
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	57.53	54.08
Os10t0549100-01	Rice	plasma membrane	56.62	53.22
Os02t0652550-00	Rice	cytosol	57.99	47.57
HORVU6Hr1G062050.9	Barley	mitochondrion	57.99	43.64
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	59.82	43.38
KRH28066	Soybean	cytosol	35.16	43.02
KRH76164	Soybean	endoplasmic reticulum	46.12	41.91
KRH77373	Soybean	endoplasmic reticulum	46.12	41.91
KRH65384	Soybean	cytosol	46.12	41.91
KRH04117	Soybean	cytosol, nucleus, plasma membrane	45.21	41.08
Zm00001d014260_P001	Maize	plastid	33.33	41.01
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	57.99	40.97
KRH57391	Soybean	endoplasmic reticulum, mitochondrion	44.75	40.66
EES05798	Sorghum	plastid	58.9	39.81
KRH11275	Soybean	cytosol	38.81	30.58
KRH50932	Soybean	cytosol	40.18	29.83
KRH02189	Soybean	cytosol	40.18	29.83
VIT_00s0287g00080.t01	Wine grape	extracellular	42.01	26.44
TraesCS2B01G214400.1	Wheat	mitochondrion	31.96	26.12
KRG92793	Soybean	cytosol	37.9	17.26
KRH34006	Soybean	cytosol	39.27	16.23

Protein Annotations

EntrezGene:100794270	Gene3D:2.60.40.10	MapMan:20.7.1	EMBL:ACUP02006741	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G037600
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	UniProt:I1LGU4	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
EnsemblPlants:KRH28185	ProteinID:KRH28185	ProteinID:KRH28185.1	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix
UniParc:UPI00023CE3DC	InterPro:VAP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:2704447..2708751

Molecular Weight (calculated)

24743.1 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.557

Length

219 amino acids

Sequence
(BLAST)

001: MTASQLISVS PDELRFHFEL EKQTFCDLKV LNNSENYVAF KVKTTSPKKY FVRPNTAVVQ PWDSCIIRVT LQAQREYPPD MQCKDKFLLQ STTVNPNTDV
101: DDLPPDTFNK ESGNSVEELK LRVAYISPTS PEGSSEDDAS KNSQSFDTSS SQALQNLKEE RDAAARQTRQ LQQELDMLKN RRNRRSDPGF SLTFAIFVGL
201: LGALLGFLMK LLFSSPSTE

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.