Factsheet for Zm00001d014260_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	70.79	40.65
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	66.85	39.4
TraesCS2B01G214400.1	Wheat	mitochondrion	58.43	38.81
GSMUA_Achr11P...	Banana	cytosol	48.31	37.39
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	48.88	37.34
KRH28185	Soybean	cytosol, golgi, nucleus	41.01	33.33
KRH04206	Soybean	cytosol	39.89	31.98
KRH57501	Soybean	plasma membrane	37.64	31.75
PGSC0003DMT400067515	Potato	nucleus	38.76	31.36
Bra017499.1-P	Field mustard	cytosol	38.2	30.91
Solyc08g078000.2.1	Tomato	nucleus	38.2	30.91
AT5G47180.1	Thale cress	cytosol	38.2	30.91
CDY43438	Canola	cytosol	38.2	30.91
Bra022111.1-P	Field mustard	cytosol	38.2	30.91
CDY40565	Canola	cytosol	37.64	30.73
Bra022110.1-P	Field mustard	cytosol	37.64	30.73
CDY28969	Canola	cytosol	37.64	30.73
PGSC0003DMT400052797	Potato	cytosol	37.08	30.7
Solyc08g007200.2.1	Tomato	unclear	37.08	30.7
CDY25982	Canola	cytosol	37.64	30.45
CDX77746	Canola	cytosol	37.08	30.28
CDY33519	Canola	cytosol	37.08	30.28
Bra024958.1-P	Field mustard	cytosol	36.52	29.82
KRH77304	Soybean	plasma membrane, vacuole	39.33	28.11
Zm00001d051288_P001	Maize	cytosol	33.15	26.22
Zm00001d017390_P001	Maize	cytosol	33.15	26.22
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	33.15	24.48
Zm00001d036342_P001	Maize	cytosol	32.02	22.8
Zm00001d049553_P001	Maize	plasma membrane	30.9	22.54
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	35.96	21.48
Zm00001d051383_P001	Maize	cytosol, plastid	31.46	21.29
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	32.02	21.03
Zm00001d010495_P002	Maize	cytosol	32.02	15.0
VIT_00s0287g00080.t01	Wine grape	extracellular	27.53	14.08
Zm00001d011904_P001	Maize	cytosol	30.9	14.07
Zm00001d042180_P002	Maize	cytosol	30.34	13.47
Zm00001d048612_P001	Maize	cytosol	17.42	4.38

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1D6GRB5	ProteinID:AQK65647.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI0008DB3403	InterPro:VAP	EnsemblPlantsGene:Zm00001d014260
EnsemblPlants:Zm00001d014260_P001	EnsemblPlants:Zm00001d014260_T001	:	:	:	:

Description

Vesicle-associated protein 2-1

Coordinates

chr5:-:38480784..38481712

Molecular Weight (calculated)

19820.0 Da

IEP (calculated)

4.741

GRAVY (calculated)

-0.021

Length

178 amino acids

Sequence
(BLAST)

001: MLQAAAPPSE APMMQISPAP IPIFAAFQVK TTSPRKYFVQ PNASIVQPWD SCTIMITLQA QKDYPPYMQC KDKFLIQSTK VAANTEMDEI PPDTFNKEAD
101: KVIEEMKLKV VYTLPSCGGS DDSSVSFLGS RSFKAASDDL MMLKNASLEE VIRSMPTILT IFFYFGTSLK TSEFITFL

Best Arabidopsis Sequence Match ( AT5G47180.1 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.