Factsheet for Zm00001d051383_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07504	Sorghum	plastid	85.55	84.59
Os02t0661900-02	Rice	cytosol	27.76	68.87
TraesCS6D01G229800.1	Wheat	cytosol	56.27	63.25
TraesCS6B01G277000.1	Wheat	cytosol	56.27	63.25
HORVU6Hr1G063580.1	Barley	cytosol	56.27	63.25
TraesCS6A01G247700.1	Wheat	cytosol	56.27	63.25
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	44.49	49.16
GSMUA_Achr7P07100_001	Banana	cytosol	44.49	49.16
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	42.59	46.86
Bra000978.1-P	Field mustard	cytosol	40.3	44.92
CDX91914	Canola	cytosol	40.3	44.92
CDX74330	Canola	cytosol	40.3	44.92
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	40.3	44.35
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	40.3	43.98
PGSC0003DMT400066797	Potato	cytosol	38.78	42.5
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	38.4	42.08
Zm00001d049553_P001	Maize	plasma membrane	38.4	41.39
Zm00001d051288_P001	Maize	cytosol	35.36	41.33
Zm00001d017390_P001	Maize	cytosol	35.36	41.33
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	35.36	34.32
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	38.4	33.89
Solyc08g007390.2.1	Tomato	unclear	24.71	32.34
Zm00001d014260_P001	Maize	plastid	21.29	31.46
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	32.7	28.48
Zm00001d036342_P001	Maize	cytosol	27.0	28.4
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	31.94	27.1
Zm00001d010495_P002	Maize	cytosol	34.6	23.95
Zm00001d011904_P001	Maize	cytosol	33.08	22.25
Zm00001d042180_P002	Maize	cytosol	31.18	20.45
Zm00001d048612_P001	Maize	cytosol	18.63	6.92

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:AQK54119.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K7UXY0	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF51	InterPro:PapD-like_sf	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI000221329A	InterPro:VAP	EnsemblPlantsGene:Zm00001d051383	EnsemblPlants:Zm00001d051383_P001	EnsemblPlants:Zm00001d051383_T001
SEG:seg	:	:	:	:	:

Description

Vesicle-associated protein 1-3

Coordinates

chr4:+:156517895..156521289

Molecular Weight (calculated)

28758.1 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.450

Length

263 amino acids

Sequence
(BLAST)

001: MSNTLLRVCP SDLKMPFEVK KHSSACLELV NRTDRWVAFK VKTTNPRKYS VRPASGVVQP RGSCGITITM QAPKEVPPDY QCKDKFLVQS VAAAEGTTHK
101: GIVPGMFSKA PGKLVEEFKL RVVYVPANPP SPVPEETEED DGSLDSDVDH EVGTPSTSNC AAGQGHTCRS QASDDEGDST SKLGLESRYA EENKMVQKDL
201: IQDASISELE LESRYAEENK KIQKELDLLR KTHASPGDFS ATSVLLVFLL SSLVGYLMFG SKT

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.