Factsheet for TraesCS6D01G229800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G247700.1	Wheat	cytosol	98.72	98.72
TraesCS6B01G277000.1	Wheat	cytosol	98.29	98.29
HORVU6Hr1G063580.1	Barley	cytosol	94.44	94.44
Os02t0661900-02	Rice	cytosol	33.76	74.53
EES07504	Sorghum	plastid	64.96	57.14
Zm00001d051383_P001	Maize	cytosol, plastid	63.25	56.27
TraesCS2D01G409200.1	Wheat	cytosol, plastid	54.7	52.89
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	50.85	50.0
GSMUA_Achr7P07100_001	Banana	cytosol	50.0	49.16
Bra000978.1-P	Field mustard	cytosol	48.29	47.88
CDX91914	Canola	cytosol	48.29	47.88
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	48.29	47.28
PGSC0003DMT400066797	Potato	cytosol	48.29	47.08
CDX74330	Canola	cytosol	47.44	47.03
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	47.44	46.25
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	46.58	45.61
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	43.16	42.44
TraesCS6D01G220300.1	Wheat	cytosol	39.74	40.79
TraesCS2D01G365300.2	Wheat	cytosol	41.45	38.96
TraesCS7D01G296400.1	Wheat	cytosol	38.89	37.45
Solyc08g007390.2.1	Tomato	unclear	29.49	34.33
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	33.76	34.05
TraesCS1D01G163100.1	Wheat	cytosol	38.89	33.21
TraesCS3D01G462100.3	Wheat	cytosol	32.48	20.94
TraesCS7D01G526500.1	Wheat	cytosol	19.66	9.47
TraesCS3D01G522300.1	Wheat	cytosol	17.95	9.15
TraesCS4D01G348900.1	Wheat	cytosol, nucleus, plastid	16.67	3.95
TraesCS7D01G002600.1	Wheat	cytosol	23.93	3.84
TraesCS7D01G013200.1	Wheat	cytosol	20.94	3.42
TraesCS7D01G526400.1	Wheat	cytosol	2.99	1.87
TraesCS7D01G006600.1	Wheat	cytosol	0.85	0.81
TraesCS3D01G542400.1	Wheat	cytosol	0.85	0.77

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF51	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G229800	EnsemblPlants:TraesCS6D01G229800.1
InterPro:VAP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:322455617..322458220

Molecular Weight (calculated)

26306.8 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.363

Length

234 amino acids

Sequence
(BLAST)

001: MSNTLLRIYP SELKMPFELR KSNTGCIELV NKTDQRVAFK VKTTNPKKYA VRPTSGIVPP GGSCGITITM QAPKEIPQDY QCKDKFLIQS VIVQEGITHK
101: DIVPEMFGRA PGRVVEEFKL RVIYIPANPP SPVPEGDEEE IADMEVDHEV FRQSMIDAAS RQEYASGPQA SHDKDASTVK SEVVKYVAEN KKLQQELEQL
201: SERRQSLGGF SRTFVLLVFL LSVLVGYWMT GRKV

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.