Factsheet for TraesCS1D01G163100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G204400.1	Wheat	cytosol	94.89	94.89
Os10t0507600-01	Rice	cytosol, plasma membrane	66.79	76.25
EER91402	Sorghum	cytosol	71.9	72.43
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	70.44	71.22
TraesCS7D01G296400.1	Wheat	cytosol	46.35	52.26
TraesCS6D01G220300.1	Wheat	cytosol	43.07	51.75
TraesCS2D01G365300.2	Wheat	cytosol	46.35	51.0
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	43.8	50.42
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	33.21	39.22
TraesCS6D01G229800.1	Wheat	cytosol	33.21	38.89
TraesCS2D01G409200.1	Wheat	cytosol, plastid	33.94	38.43
TraesCS3D01G462100.3	Wheat	cytosol	37.23	28.1
TraesCS3D01G522300.1	Wheat	cytosol	19.34	11.55
TraesCS7D01G526500.1	Wheat	cytosol	18.98	10.7
TraesCS7D01G013200.1	Wheat	cytosol	26.28	5.03
TraesCS4D01G348900.1	Wheat	cytosol, nucleus, plastid	17.88	4.96
TraesCS7D01G002600.1	Wheat	cytosol	20.44	3.84
TraesCS7D01G526400.1	Wheat	cytosol	3.28	2.41
TraesCS7D01G006600.1	Wheat	cytosol	0.36	0.41
TraesCS3D01G542400.1	Wheat	cytosol	0.36	0.39
TraesCSU01G255000.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF47	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G163100	EnsemblPlants:TraesCS1D01G163100.1
InterPro:VAP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:233894088..233897271

Molecular Weight (calculated)

29943.3 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.204

Length

274 amino acids

Sequence
(BLAST)

001: MAASSDLLDV DPPELQFPFE LDKQISCPLK MINKTDRTVA FKVKTTSPKK YCVRPNNGVV RPRSTCEVVV TMQAQTVAPP DLQCKDKFLV QSVVVADGLS
101: AKDITPQMFM KQEGNVVEEV RMRVTYVMPP ESPSEIAEES DGPQRILAPM QRIVNNGRSA SELSSGSVSL RSAELGTEVG SPTGPVVRTE ELLKAAGHAA
201: ETRTYTGPDA QSLELLALIT KLTKEKDSAL EQNKKLHNEL ELVRRDASKQ GGFSLIFVLV CGLLSIILGY LVKK

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.