CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	89.71	90.04
Os10t0507600-01	Rice	cytosol, plasma membrane	65.07	73.75
TraesCS1D01G163100.1	Wheat	cytosol	72.43	71.9
TraesCS1B01G204400.1	Wheat	cytosol	71.69	71.17
KXG31128	Sorghum	cytosol	43.01	52.0
EES12559	Sorghum	cytosol	46.32	50.6
EES14570	Sorghum	cytosol, nucleus, plasma membrane	44.12	49.18
KXG24454	Sorghum	cytosol	43.38	48.96
KXG26858	Sorghum	cytosol, plastid	34.93	38.93
EES07504	Sorghum	plastid	36.03	36.84
OQU79125	Sorghum	cytosol	20.96	29.69
EES05798	Sorghum	plastid	33.09	27.78
KXG21863	Sorghum	cytosol	34.93	26.24
EES04183	Sorghum	cytosol	31.62	22.81
TraesCSU01G255000.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:8067069	UniProt:C5WWC3	ncoils:Coil	EnsemblPlants:EER91402
ProteinID:EER91402	ProteinID:EER91402.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF47	InterPro:PapD-like_sf	EnsemblPlantsGene:SORBI_3001G199800	SUPFAM:SSF49354	unigene:Sbi.6612	TMHMM:TMhelix
UniParc:UPI0001A82422	InterPro:VAP	RefSeq:XP_002464404.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:18104367..18107450

Molecular Weight (calculated)

29591.0 Da

IEP (calculated)

8.966

GRAVY (calculated)

-0.133

Length

272 amino acids

Sequence
(BLAST)

001: MAASCDLLDV DPPELQFPFV LDKQISCPLR LVNRTDRTVA FKVKTTNPRK YCVRPNNGVV PPRSSSTVVV TMQAQKVVPP DLQCKDKFLV QSVVVSDRLS
101: AKDITSQMFV KGGGNVVEEV KLKVAYVMPP EPPSEIAEEH DGLERVLVPM QRTVDNGRST SGLSSGSVSL KSAEEVGSPV GRIVKSEEFL KSAGPAMATK
201: TYAGPGEQSH QLSSIIAKLT EEKNSALEQN RKLQVELELV RCEARKQQGA FSLVLLLAFG LLGIVLGYIV KK

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.