CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G024800.2	Wheat	cytosol, nucleus, plastid	40.62	52.35
TraesCS2B01G036500.1	Wheat	cytosol	39.58	51.01
HORVU2Hr1G003640.7	Barley	cytosol	53.12	48.57
TraesCS6B01G008300.1	Wheat	cytosol	55.73	41.0
KXG31128	Sorghum	cytosol	31.77	27.11
EES12559	Sorghum	cytosol	32.81	25.3
EES14570	Sorghum	cytosol, nucleus, plasma membrane	29.69	23.36
KXG24454	Sorghum	cytosol	29.17	23.24
EER91402	Sorghum	cytosol	29.69	20.96
KXG26858	Sorghum	cytosol, plastid	25.0	19.67
EES07504	Sorghum	plastid	24.48	17.67
EES05798	Sorghum	plastid	26.04	15.43
KXG21863	Sorghum	cytosol	24.48	12.98
EES04183	Sorghum	cytosol	21.88	11.14

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1Z5R6R2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	EnsemblPlants:OQU79125	ProteinID:OQU79125	ProteinID:OQU79125.1
PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF87	InterPro:PapD-like_sf	EnsemblPlantsGene:SORBI_3008G099232
SUPFAM:SSF49354	UniParc:UPI000B8BAF07	InterPro:VAP	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:47197710..47212341

Molecular Weight (calculated)

21917.5 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.227

Length

192 amino acids

Sequence
(BLAST)

001: MLRVKTCIDI ALRCVDTDRN KRPYIKDIVN ELEELEAKIQ KMTLSSDHSK AVILDQQQSS DSNVLAVDPS LELRFLFELR KDISCCLQLT NKTDDYIAFN
101: IKTNRTKYYA EPNIGIMPPC SKRYISVTLR AQETAPPNMQ CHDVLLVQSV NVSEGLTSDN VTEDFFKQVM VDKVLDAVKL PIVYITRDHL SC

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.