CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	92.95	92.95
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	79.25	80.25
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	78.42	79.41
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	78.01	78.99
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	77.59	78.57
Os08t0155100-01	Rice	plasma membrane	76.76	78.06
GSMUA_Achr1P20230_001	Banana	cytosol	65.98	67.09
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	62.66	63.18
GSMUA_Achr6P36770_001	Banana	cytosol	53.94	62.2
GSMUA_Achr7P06650_001	Banana	cytosol	55.19	61.57
PGSC0003DMT400066797	Potato	cytosol	60.17	60.42
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	59.34	59.83
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	59.34	59.58
Bra000978.1-P	Field mustard	cytosol	56.85	58.05
CDX91914	Canola	cytosol	56.85	58.05
CDX74330	Canola	cytosol	56.02	57.2
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	55.6	55.83
EES14570	Sorghum	cytosol, nucleus, plasma membrane	53.53	52.87
EES12559	Sorghum	cytosol	53.11	51.41
KXG31128	Sorghum	cytosol	46.47	49.78
Solyc08g007390.2.1	Tomato	unclear	36.93	44.28
EER91402	Sorghum	cytosol	48.96	43.38
KXG26858	Sorghum	cytosol, plastid	43.57	43.03
EES07504	Sorghum	plastid	44.4	40.23
OQU79125	Sorghum	cytosol	23.24	29.17
KXG21863	Sorghum	cytosol	41.91	27.9
EES05798	Sorghum	plastid	37.34	27.78
EES04183	Sorghum	cytosol	43.15	27.59

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1B6PFJ3	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KXG24454	ProteinID:KXG24454	ProteinID:KXG24454.1
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	EnsemblPlantsGene:SORBI_3007G044400	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0001C80BE9	InterPro:VAP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:4504518..4509002

Molecular Weight (calculated)

26228.4 Da

IEP (calculated)

7.927

GRAVY (calculated)

-0.261

Length

241 amino acids

Sequence
(BLAST)

001: MSGGSGTFLE IQPSELAFPF EIMRQSSCSM QLTNKTDHYV AFKVKTTNPK QYCVRPNIGV VLPGSTCDVT VTMQAQKASP SDMQCKDKFL VQSVVAENGA
101: TAQEINAAMF NKEPGKVVDE FKLRVVYVPT TTPNPIPEES ELGASAPSYS QENGISHSTM PLSVSRSSAE TTKEKPSEAT SVISKLTEEK MSAIQQNQKL
201: RQELELLRKE SSKTSGGGFS ITFLFVVGLL GIIVGYILKR T

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.