Factsheet for GSMUA_Achr1P20230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36770_001	Banana	cytosol	69.2	78.47
GSMUA_Achr7P06650_001	Banana	cytosol	67.93	74.54
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	71.73	70.83
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	69.2	68.91
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	68.78	68.2
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	68.35	68.07
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	68.35	68.07
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	67.93	67.65
PGSC0003DMT400066797	Potato	cytosol	67.93	67.08
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	67.93	66.81
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	67.09	66.25
KXG24454	Sorghum	cytosol	67.09	65.98
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	66.24	65.97
GSMUA_Achr7P07100_001	Banana	cytosol	65.82	65.55
Os08t0155100-01	Rice	plasma membrane	65.4	65.4
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	64.14	63.6
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	63.71	63.18
CDX91914	Canola	cytosol	62.87	63.14
Bra000978.1-P	Field mustard	cytosol	62.87	63.14
CDX74330	Canola	cytosol	62.03	62.29
GSMUA_Achr5P20880_001	Banana	cytosol	62.03	61.51
GSMUA_Achr1P20280_001	Banana	cytosol	53.16	58.88
GSMUA_Achr11P...	Banana	cytosol	45.15	53.5
GSMUA_Achr8P11120_001	Banana	cytosol	60.76	51.43
Solyc08g007390.2.1	Tomato	unclear	40.51	47.76
GSMUA_Achr11P...	Banana	cytosol	40.51	41.74
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	39.66	40.34
GSMUA_Achr8P21990_001	Banana	cytosol	47.68	37.54
GSMUA_Achr3P08840_001	Banana	cytosol	35.87	35.42
GSMUA_Achr10P...	Banana	cytosol	44.3	35.0

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr1G20230_001
EnsemblPlants:GSMUA_Achr1P20230_001	EnsemblPlants:GSMUA_Achr1T20230_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0S1I1
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002963CD6	InterPro:VAP	SEG:seg

Description

MSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G20230_001]

Coordinates

chr1:+:15168524..15174466

Molecular Weight (calculated)

26264.5 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.489

Length

237 amino acids

Sequence
(BLAST)

001: MSEGGFLDIQ PTELKFPFEL KKQSSCSMQL INKTDQYVAF KVKTTNPKKY CVRPNTGVVL PRSTCDVTVT MQAQKEAPPD MQCKDKFLLQ SVIAENGVTT
101: KDITSEMFNK EPGKVVDEYK LRVVCVPASP PSPVPEESEE GSSPRLSTFE NGAQSLKTLD SVSRANEPPR EKSSEALAMN SKLPEEKNSA IQQNQKLRQE
201: LDQLRKELNG HYGSFSVTFV VLVGLLGALI GYIIKKS

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [cytosol,golgi,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.