Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P20230_001 | Banana | cytosol | 74.54 | 67.93 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 63.89 | 66.03 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 66.67 | 60.0 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 61.57 | 55.88 |
| KXG24454 | Sorghum | cytosol | 61.57 | 55.19 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 60.65 | 55.04 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 60.65 | 54.81 |
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 60.19 | 54.62 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 60.19 | 54.62 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 60.65 | 54.36 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 59.26 | 53.56 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 58.33 | 52.94 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 58.33 | 52.94 |
| Os08t0155100-01 | Rice | plasma membrane | 57.87 | 52.74 |
| PGSC0003DMT400066797 | Potato | cytosol | 58.33 | 52.5 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 57.87 | 52.08 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 57.41 | 51.88 |
| CDX91914 | Canola | cytosol | 56.48 | 51.69 |
| Bra000978.1-P | Field mustard | cytosol | 56.48 | 51.69 |
| CDX74330 | Canola | cytosol | 55.56 | 50.85 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 55.56 | 50.21 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 48.61 | 49.07 |
| GSMUA_Achr11P... | Banana | cytosol | 43.52 | 47.0 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 53.7 | 41.43 |
| Solyc08g007390.2.1 | Tomato | unclear | 31.94 | 34.33 |
| GSMUA_Achr11P... | Banana | cytosol | 35.65 | 33.48 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 34.72 | 32.19 |
| GSMUA_Achr8P21990_001 | Banana | cytosol | 41.67 | 29.9 |
| GSMUA_Achr3P08840_001 | Banana | cytosol | 32.41 | 29.17 |
| GSMUA_Achr10P... | Banana | cytosol | 38.89 | 28.0 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSMUA_Achr7G06650_001 | EnsemblPlants:GSMUA_Achr7P06650_001 | EnsemblPlants:GSMUA_Achr7T06650_001 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M0TFA5 | InterPro:MSP_dom | PFAM:PF00635 |
| PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF43 | InterPro:PapD-like_sf | SUPFAM:SSF49354 |
| UniParc:UPI0002965180 | InterPro:VAP | SEG:seg | : | : | : |
Description
MSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G06650_001]
Coordinates
chr7:+:4889072..4892976
Molecular Weight (calculated)
23941.6 Da
IEP (calculated)
8.896
GRAVY (calculated)
-0.609
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDGGFLGIQ PTELKVPFEL KKQSSCSMQL TNKTDQYVAF KVKTTNPKKY CVRPNTRIVL PRSTCDVTGK PSQMKAPSDM QCNDKFLLQS VITEHAITSE
101: MFNKEPGKVV DEFKLRVTYV PAGPPSPVPE EPEEGSSTLE NGLHSLQTQD SVSRYSEPSK EKSSEALAMI SKLTEEKHTA IQQNQKASAG TGTHFKSHTN
201: DLLRKKHNVV VSMVLL
101: MFNKEPGKVV DEFKLRVTYV PAGPPSPVPE EPEEGSSTLE NGLHSLQTQD SVSRYSEPSK EKSSEALAMI SKLTEEKHTA IQQNQKASAG TGTHFKSHTN
201: DLLRKKHNVV VSMVLL
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.