Factsheet for Bra000978.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74330	Canola	cytosol	99.15	99.15
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	86.44	85.36
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	68.64	67.78
PGSC0003DMT400066797	Potato	cytosol	66.1	65.0
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	65.25	64.17
GSMUA_Achr1P20230_001	Banana	cytosol	63.14	62.87
Os02t0661900-02	Rice	cytosol	27.12	60.38
Bra003313.1-P	Field mustard	cytosol	56.36	59.64
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	58.9	58.4
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	58.9	58.16
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	58.9	57.68
Os08t0155100-01	Rice	plasma membrane	57.2	56.96
KXG24454	Sorghum	cytosol	58.05	56.85
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	57.2	56.72
GSMUA_Achr7P07100_001	Banana	cytosol	57.2	56.72
GSMUA_Achr7P06650_001	Banana	cytosol	51.69	56.48
GSMUA_Achr6P36770_001	Banana	cytosol	50.0	56.46
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	56.78	56.3
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	56.78	56.3
Bra007547.1-P	Field mustard	cytosol	56.78	56.3
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	57.2	56.25
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	56.78	56.07
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	55.93	55.46
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	54.24	53.33
HORVU6Hr1G063580.1	Barley	cytosol	47.88	48.29
TraesCS6D01G229800.1	Wheat	cytosol	47.88	48.29
TraesCS6B01G277000.1	Wheat	cytosol	47.88	48.29
TraesCS6A01G247700.1	Wheat	cytosol	47.88	48.29
Bra022110.1-P	Field mustard	cytosol	44.07	47.71
Os04t0554200-02	Rice	cytosol, nucleus, plastid	49.15	47.54
KXG26858	Sorghum	cytosol, plastid	48.73	47.13
TraesCS2D01G409200.1	Wheat	cytosol, plastid	47.46	46.28
TraesCS2B01G430600.1	Wheat	cytosol, plastid	47.03	45.87
TraesCS2A01G412000.1	Wheat	cytosol, plastid	46.61	45.45
Bra024958.1-P	Field mustard	cytosol	41.95	45.41
Bra022111.1-P	Field mustard	cytosol	41.95	45.0
Bra017499.1-P	Field mustard	cytosol	41.95	45.0
HORVU2Hr1G097220.19	Barley	plastid	43.22	41.3
EES07504	Sorghum	plastid	45.76	40.6
Zm00001d051383_P001	Maize	cytosol, plastid	44.92	40.3
Bra035442.1-P	Field mustard	cytosol	18.22	39.81
Bra031641.1-P	Field mustard	cytosol	42.8	29.45
Bra018597.1-P	Field mustard	cytosol	42.37	26.95
Bra030744.1-P	Field mustard	cytosol	41.53	24.94

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra000978	EnsemblPlants:Bra000978.1	EnsemblPlants:Bra000978.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4C9U9
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000254077D	InterPro:VAP	SEG:seg

Description

AT4G00170 (E=2e-086) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA03:+:14231395..14232651

Molecular Weight (calculated)

26147.4 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.372

Length

236 amino acids

Sequence
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSLQI SNKTSTQVVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QSVIVSDATT
101: SKDVLAEMFN KEPGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPRTDFP ASQFDDHVSR TLEETSEKSS EAWSMIHKLT EEKACAVQQS QKLRQELEML
201: RRESSNKQSG GGHSLVLMLL VGLLGCVIGY ILNVRT

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.