Factsheet for Bra040323.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45140.1	Bra009613.1-P	AT5G02100.1	19207211

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37029	Canola	cytosol, golgi, plasma membrane	99.58	99.58
CDY27392	Canola	cytosol, golgi, plasma membrane	99.16	99.16
CDX83400	Canola	cytosol, nucleus, plasma membrane	94.56	93.78
Bra003313.1-P	Field mustard	cytosol	87.03	93.27
CDX95631	Canola	cytosol, golgi, plasma membrane	93.31	92.53
AT2G45140.1	Thale cress	cytosol	89.54	89.54
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	82.01	82.01
Bra007547.1-P	Field mustard	cytosol	80.33	80.67
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	80.75	80.42
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	72.8	72.8
Solyc01g090910.2.1	Tomato	nucleus	69.87	71.67
KRH76164	Soybean	endoplasmic reticulum	71.97	71.37
KRH65384	Soybean	cytosol	71.97	71.37
Solyc10g018350.1.1	Tomato	cytosol	68.62	68.91
Zm00001d049553_P001	Maize	plasma membrane	63.6	62.3
GSMUA_Achr5P20880_001	Banana	cytosol	61.51	61.51
TraesCS7A01G300700.1	Wheat	cytosol	62.34	61.32
TraesCS7D01G296400.1	Wheat	cytosol	62.34	61.32
Os08t0156700-01	Rice	plasma membrane	61.92	60.91
EES14570	Sorghum	cytosol, nucleus, plasma membrane	61.51	60.25
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	59.83	59.83
Bra000978.1-P	Field mustard	cytosol	58.16	58.9
PGSC0003DMT400066920	Potato	cytosol	65.69	58.8
Os04t0534400-01	Rice	cytosol	60.67	58.0
TraesCS2A01G368500.1	Wheat	cytosol	60.25	57.83
HORVU2Hr1G091830.4	Barley	cytosol	59.83	57.43
TraesCS2B01G385700.2	Wheat	cytosol	59.83	57.43
TraesCS2D01G365300.2	Wheat	cytosol	59.41	57.03
GSMUA_Achr1P20280_001	Banana	cytosol	51.05	57.01
Bra035442.1-P	Field mustard	cytosol	25.52	56.48
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	53.56	56.39
Solyc06g034220.2.1	Tomato	nucleus	52.72	55.51
EES12559	Sorghum	cytosol	57.74	55.42
Zm00001d051288_P001	Maize	cytosol	50.63	53.78
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	51.05	53.51
KXG31128	Sorghum	cytosol	50.21	53.33
TraesCS6D01G220300.1	Wheat	cytosol	50.63	53.07
Zm00001d017390_P001	Maize	cytosol	49.79	52.89
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	50.21	52.63
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	49.79	52.19
GSMUA_Achr8P11120_001	Banana	cytosol	61.09	52.14
GSMUA_Achr11P...	Banana	cytosol	42.68	51.0
HORVU7Hr1G071270.2	Barley	mitochondrion	61.92	50.17
PGSC0003DMT400076826	Potato	cytosol	12.13	48.33
Os02t0643000-01	Rice	plasma membrane	50.21	46.33
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	56.49	45.3
Bra022110.1-P	Field mustard	cytosol	41.0	44.95
Bra024958.1-P	Field mustard	cytosol	40.59	44.5
Bra022111.1-P	Field mustard	cytosol	40.17	43.64
Bra017499.1-P	Field mustard	cytosol	39.33	42.73
Zm00001d036342_P001	Maize	cytosol	38.49	36.8
Bra031641.1-P	Field mustard	cytosol	41.84	29.15
Bra018597.1-P	Field mustard	cytosol	41.84	26.95
Bra030744.1-P	Field mustard	cytosol	39.75	24.17

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra040323	EnsemblPlants:Bra040323.1	EnsemblPlants:Bra040323.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4FGU5
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000254425A	InterPro:VAP	SEG:seg

Description

AT2G45140 (E=4e-108) PVA12 | PVA12 (PLANT VAP HOMOLOG 12); structural molecule

Coordinates

chrA04:+:18485354..18487618

Molecular Weight (calculated)

26523.9 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.406

Length

239 amino acids

Sequence
(BLAST)

001: MSNALLDIDP IDLQFPFELK KQISCSLYLA NKTDDYVAFK VKTTNPKKYC VRPNTGVVLP RSSSEVLVTM QAQKEAPADM QCKDKFLLQC VVASPGVTAK
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPRP PSPVREGSEE GSSPRASVSD NGASDFTAAP RFSVDRLEPQ ENSTEARALI TRLTEEKNSA IQLNNRLQQE
201: LEKLKRESKR SQSGGGIPFM YVLLVGLIGL ILGYIMKRT

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.