Factsheet for PGSC0003DMT400066920

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090910.2.1	Tomato	nucleus	74.16	84.98
Bra003313.1-P	Field mustard	cytosol	58.8	70.4
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	61.8	69.04
KRH65384	Soybean	cytosol	59.93	66.39
KRH76164	Soybean	endoplasmic reticulum	59.93	66.39
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	58.8	65.69
CDY37029	Canola	cytosol, golgi, plasma membrane	58.8	65.69
CDY27392	Canola	cytosol, golgi, plasma membrane	58.8	65.69
CDY56247	Canola	cytosol	58.43	65.0
CDY48365	Canola	cytosol	57.68	64.44
CDX89063	Canola	cytosol, golgi, plasma membrane	57.68	64.44
Bra007547.1-P	Field mustard	cytosol	57.3	64.29
CDY41153	Canola	cytosol	57.3	64.29
CDX71796	Canola	cytosol	57.3	64.29
CDY57247	Canola	cytosol	57.68	64.17
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	57.3	64.02
CDX67837	Canola	cytosol, golgi, plasma membrane	57.3	63.75
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	57.3	63.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	55.81	62.34
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	49.44	62.26
CDX83400	Canola	cytosol, nucleus, plasma membrane	56.18	62.24
GSMUA_Achr5P20880_001	Banana	cytosol	55.43	61.92
Os08t0156700-01	Rice	plasma membrane	56.18	61.73
CDX95631	Canola	cytosol, golgi, plasma membrane	55.43	61.41
TraesCS7D01G296400.1	Wheat	cytosol	54.31	59.67
TraesCS7A01G300700.1	Wheat	cytosol	53.93	59.26
GSMUA_Achr1P20280_001	Banana	cytosol	47.19	58.88
EES12559	Sorghum	cytosol	54.31	58.23
Zm00001d049553_P001	Maize	plasma membrane	53.18	58.2
Os04t0534400-01	Rice	cytosol	53.93	57.6
EES14570	Sorghum	cytosol, nucleus, plasma membrane	52.43	57.38
TraesCS2A01G368500.1	Wheat	cytosol	52.06	55.82
TraesCS2B01G385700.2	Wheat	cytosol	51.69	55.42
HORVU2Hr1G091830.4	Barley	cytosol	51.69	55.42
TraesCS2D01G365300.2	Wheat	cytosol	51.31	55.02
TraesCS6D01G220300.1	Wheat	cytosol	46.82	54.82
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	46.44	54.63
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	46.44	54.39
Zm00001d017390_P001	Maize	cytosol	45.69	54.22
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	46.07	53.95
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	46.07	53.95
Zm00001d051288_P001	Maize	cytosol	45.32	53.78
KXG31128	Sorghum	cytosol	45.32	53.78
PGSC0003DMT400066797	Potato	cytosol	48.31	53.75
PGSC0003DMT400076826	Potato	cytosol	11.98	53.33
GSMUA_Achr11P...	Banana	cytosol	38.58	51.5
GSMUA_Achr8P11120_001	Banana	cytosol	53.18	50.71
HORVU7Hr1G071270.2	Barley	mitochondrion	53.93	48.81
Os02t0643000-01	Rice	plasma membrane	46.44	47.88
Bra035442.1-P	Field mustard	cytosol	19.1	47.22
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	52.06	46.64
PGSC0003DMT400067515	Potato	nucleus	33.71	40.91
CDY44556	Canola	cytosol, extracellular, plastid	15.36	40.2
PGSC0003DMT400052797	Potato	cytosol	31.84	39.53
Zm00001d036342_P001	Maize	cytosol	36.7	39.2
PGSC0003DMT400057834	Potato	cytosol	37.08	31.33
PGSC0003DMT400027619	Potato	cytosol	36.7	27.61
AT1G51270.3	Thale cress	cytosol	45.69	19.15

Protein Annotations

EntrezGene:102579309	Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1CGD9	InterPro:MSP_dom	PFAM:PF00635	EnsemblPlantsGene:PGSC0003DMG400026015
PGSC:PGSC0003DMG400026015	EnsemblPlants:PGSC0003DMT400066920	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf
SUPFAM:SSF49354	UniParc:UPI00029588F4	InterPro:VAP	SEG:seg	:	:

Description

VAP27 [Source:PGSC_GENE;Acc:PGSC0003DMG400026015]

Coordinates

chr1:+:70203131..70210238

Molecular Weight (calculated)

30268.6 Da

IEP (calculated)

8.745

GRAVY (calculated)

-0.443

Length

267 amino acids

Sequence
(BLAST)

001: MSNGELLQIH PVELQFPFEL KKQISSSLQL SNKSDDYVAF KVKTTNPKKY CVRPNTGIVM PRSTCEVIVT MQAQKEAPPD MQCKDKFLLQ SVIVSPGTMA
101: KDITPEMFNK ESGNHVEEVK LRVAYVPPQP PPSPVREGSE EGSSPRASIS ENGAEFHNTK ALILKLSEEK KSAIQQNNKL KQELELLRRE SSRRRGGIPF
201: MYVIIVGLMM EDMISYEEKL NVRRFNYFLD ASSTSIFRTL YHITSDHNLV KIIQAQLQYA VSKVADD

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.