Factsheet for PGSC0003DMT400067515

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078000.2.1	Tomato	nucleus	97.27	97.27
PGSC0003DMT400052797	Potato	cytosol	75.91	77.67
KRH28185	Soybean	cytosol, golgi, nucleus	68.64	68.95
KRH04206	Soybean	cytosol	67.27	66.67
KRH57501	Soybean	plasma membrane	63.64	66.35
CDY28969	Canola	cytosol	63.64	64.22
CDY40565	Canola	cytosol	63.64	64.22
Bra022110.1-P	Field mustard	cytosol	63.18	63.76
AT5G47180.1	Thale cress	cytosol	63.64	63.64
CDX77746	Canola	cytosol	62.27	62.84
CDY33519	Canola	cytosol	62.27	62.84
Bra024958.1-P	Field mustard	cytosol	60.91	61.47
Bra022111.1-P	Field mustard	cytosol	61.36	61.36
Bra017499.1-P	Field mustard	cytosol	60.91	60.91
CDY43438	Canola	cytosol	60.91	60.91
CDY25982	Canola	cytosol	60.45	60.45
KRH77304	Soybean	plasma membrane, vacuole	67.27	59.44
GSMUA_Achr11P...	Banana	cytosol	57.73	55.22
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	55.91	52.79
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	54.55	51.72
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	54.55	51.72
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	54.55	51.72
Os10t0549100-01	Rice	plasma membrane	53.64	50.64
Os02t0652550-00	Rice	cytosol	55.91	46.07
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	40.45	41.98
HORVU6Hr1G062050.9	Barley	mitochondrion	55.45	41.92
PGSC0003DMT400066797	Potato	cytosol	45.45	41.67
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	56.36	41.06
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	56.36	40.0
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	40.91	39.65
Zm00001d014260_P001	Maize	plastid	31.36	38.76
EES05798	Sorghum	plastid	55.91	37.96
PGSC0003DMT400076826	Potato	cytosol	10.0	36.67
PGSC0003DMT400066920	Potato	cytosol	40.91	33.71
VIT_00s0287g00080.t01	Wine grape	extracellular	45.0	28.45
TraesCS2B01G214400.1	Wheat	mitochondrion	33.18	27.24
PGSC0003DMT400057834	Potato	cytosol	37.73	26.27
PGSC0003DMT400027619	Potato	cytosol	41.82	25.92

Protein Annotations

EntrezGene:102594610	Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1CHF4	InterPro:MSP_dom	PFAM:PF00635
EnsemblPlantsGene:PGSC0003DMG400026252	PGSC:PGSC0003DMG400026252	EnsemblPlants:PGSC0003DMT400067515	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00029516CD	InterPro:VAP
RefSeq:XP_006359223.1	SEG:seg	:	:	:	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026252]

Coordinates

chr8:-:51147358..51154010

Molecular Weight (calculated)

25096.7 Da

IEP (calculated)

7.385

GRAVY (calculated)

-0.527

Length

220 amino acids

Sequence
(BLAST)

001: MTGATNQFIS VSPEELKFQF ELEKQSYCDL KVTNSTESYV AFKVKTTSPK KYFVRPNTGV IHPWDSCFIR VTLQAQKEYP SDMQCKDKFL LQSTIVNSDA
101: DELPPDTFNK DSGRNVEECK LRVVYISPHS SPGHSEDAFK QSSDGNSSQE VQRARDERDA LFRQTQQLQQ ELEVLKRQKR RRSDAGFSLK FALLVGLIGL
201: MVGFLFKLLM SSPSTEIVDF

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.