Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 78.35 | 98.28 |
| TraesCS6D01G224100.1 | Wheat | cytosol, golgi, plasma membrane | 78.35 | 98.28 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 78.01 | 97.84 |
| Os10t0549100-01 | Rice | plasma membrane | 68.38 | 85.41 |
| Os02t0652550-00 | Rice | cytosol | 71.13 | 77.53 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 76.98 | 72.26 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 73.54 | 70.86 |
| EES05798 | Sorghum | plastid | 78.35 | 70.37 |
| GSMUA_Achr11P... | Banana | cytosol | 55.33 | 70.0 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 55.33 | 69.1 |
| KRH57501 | Soybean | plasma membrane | 42.96 | 59.24 |
| KRH04206 | Soybean | cytosol | 45.02 | 59.01 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 43.64 | 57.99 |
| PGSC0003DMT400067515 | Potato | nucleus | 41.92 | 55.45 |
| Solyc08g007200.2.1 | Tomato | unclear | 40.89 | 55.35 |
| PGSC0003DMT400052797 | Potato | cytosol | 40.89 | 55.35 |
| CDY40565 | Canola | cytosol | 41.24 | 55.05 |
| CDY28969 | Canola | cytosol | 41.24 | 55.05 |
| Bra022110.1-P | Field mustard | cytosol | 41.24 | 55.05 |
| AT5G47180.1 | Thale cress | cytosol | 41.58 | 55.0 |
| CDY33519 | Canola | cytosol | 40.89 | 54.59 |
| Solyc08g078000.2.1 | Tomato | nucleus | 41.24 | 54.55 |
| Bra022111.1-P | Field mustard | cytosol | 41.24 | 54.55 |
| CDX77746 | Canola | cytosol | 40.55 | 54.13 |
| CDY43438 | Canola | cytosol | 40.89 | 54.09 |
| Bra024958.1-P | Field mustard | cytosol | 40.21 | 53.67 |
| Bra017499.1-P | Field mustard | cytosol | 40.55 | 53.64 |
| CDY25982 | Canola | cytosol | 40.55 | 53.64 |
| KRH77304 | Soybean | plasma membrane, vacuole | 44.33 | 51.81 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 29.9 | 38.16 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 29.55 | 36.13 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 28.87 | 35.9 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 29.21 | 34.14 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 27.49 | 27.12 |
| HORVU2Hr1G097220.19 | Barley | plastid | 21.65 | 25.51 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 28.52 | 23.85 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 28.18 | 21.81 |
| HORVU2Hr1G003640.7 | Barley | cytosol | 12.71 | 17.62 |
| HORVU3Hr1G006600.1 | Barley | cytosol | 14.43 | 5.91 |
| HORVU5Hr1G012420.3 | Barley | nucleus | 13.4 | 3.96 |
| HORVU6Hr1G011350.2 | Barley | cytosol | 1.37 | 0.32 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | UniProt:A0A287UDX9 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0016020 |
| GO:GO:0016021 | EnsemblPlantsGene:HORVU6Hr1G062050 | EnsemblPlants:HORVU6Hr1G062050.9 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF42 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI000B486450 | InterPro:VAP | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:+:414965610..414968982
Molecular Weight (calculated)
32370.9 Da
IEP (calculated)
8.711
GRAVY (calculated)
-0.351
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: RQCRPGAKKG KANPFISLFL PPRPSTLPPH FCSESLLVVD FRFRPVPAFL PEDKGSGVAM VGGTLISVYP DDLTFLFELD KPCYCNLKVV NNSEHHVAFK
101: VKTTSPRKYF VRPNASVVQP WDSCTITITL QAQKEYPPDM QSKDKFLIQS TRVAASTDMD EIPPDTFNKD GDKVIEEMKL KVVYTLPSGS SDDSGVTSSA
201: NRSFKQGGDD LSMLKNASIE EIQTIQRLKD ERDNNLQQNQ QMQRELDMLR RRRSRKGDAG FSLTFAAFAG IIGLLVGLLM SLIFSSPPAT A
101: VKTTSPRKYF VRPNASVVQP WDSCTITITL QAQKEYPPDM QSKDKFLIQS TRVAASTDMD EIPPDTFNKD GDKVIEEMKL KVVYTLPSGS SDDSGVTSSA
201: NRSFKQGGDD LSMLKNASIE EIQTIQRLKD ERDNNLQQNQ QMQRELDMLR RRRSRKGDAG FSLTFAAFAG IIGLLVGLLM SLIFSSPPAT A
001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
Arabidopsis Description
PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.