Factsheet for Bra017499.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43438	Canola	cytosol	99.55	99.55
CDY25982	Canola	cytosol	99.09	99.09
Bra022111.1-P	Field mustard	cytosol	97.73	97.73
AT5G47180.1	Thale cress	cytosol	90.0	90.0
Bra022110.1-P	Field mustard	cytosol	89.09	89.91
Bra024958.1-P	Field mustard	cytosol	88.64	89.45
Solyc08g007200.2.1	Tomato	unclear	61.36	62.79
KRH28185	Soybean	cytosol, golgi, nucleus	62.27	62.56
PGSC0003DMT400052797	Potato	cytosol	60.91	62.33
Solyc08g078000.2.1	Tomato	nucleus	60.91	60.91
PGSC0003DMT400067515	Potato	nucleus	60.91	60.91
KRH57501	Soybean	plasma membrane	57.73	60.19
KRH04206	Soybean	cytosol	60.45	59.91
KRH77304	Soybean	plasma membrane, vacuole	61.36	54.22
GSMUA_Achr11P...	Banana	cytosol	55.45	53.04
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	53.64	50.64
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	52.73	50.0
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	52.73	50.0
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	52.73	50.0
Os10t0549100-01	Rice	plasma membrane	52.27	49.36
Os02t0652550-00	Rice	cytosol	53.18	43.82
Bra000978.1-P	Field mustard	cytosol	45.0	41.95
Bra003313.1-P	Field mustard	cytosol	41.82	41.26
HORVU6Hr1G062050.9	Barley	mitochondrion	53.64	40.55
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	42.73	39.33
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	42.73	39.33
Bra007547.1-P	Field mustard	cytosol	42.27	39.08
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	53.64	39.07
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	42.27	38.75
Zm00001d014260_P001	Maize	plastid	30.91	38.2
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	53.18	37.74
EES05798	Sorghum	plastid	53.64	36.42
Bra035442.1-P	Field mustard	cytosol	16.36	33.33
VIT_00s0287g00080.t01	Wine grape	extracellular	42.27	26.72
TraesCS2B01G214400.1	Wheat	mitochondrion	30.91	25.37
Bra031641.1-P	Field mustard	cytosol	35.91	23.03
Bra018597.1-P	Field mustard	cytosol	35.91	21.29
Bra030744.1-P	Field mustard	cytosol	35.91	20.1

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra017499	EnsemblPlants:Bra017499.1	EnsemblPlants:Bra017499.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4DLW8
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF42
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002542436	InterPro:VAP	SEG:seg

Description

AT5G47180 (E=6e-100) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA09:+:15806373..15808162

Molecular Weight (calculated)

24453.3 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.453

Length

220 amino acids

Sequence
(BLAST)

001: MSGVGENQLI SIQPDELKFL FELEKQSYCD LKVSNKTDNY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTTVPPH
101: TDVDELPQDT FTKDSSKTLT ECKLKVSYIA TSTTQRSSES GATSGDGNGS ESISVTAIQR RKEERDAAVK QTQQLQHDLE MLKKRRSNSA NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.