Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40565 | Canola | cytosol | 93.18 | 94.04 |
| CDY28969 | Canola | cytosol | 93.18 | 94.04 |
| Bra022110.1-P | Field mustard | cytosol | 92.73 | 93.58 |
| CDX77746 | Canola | cytosol | 92.73 | 93.58 |
| CDY33519 | Canola | cytosol | 92.27 | 93.12 |
| Bra024958.1-P | Field mustard | cytosol | 90.45 | 91.28 |
| CDY43438 | Canola | cytosol | 90.45 | 90.45 |
| Bra022111.1-P | Field mustard | cytosol | 90.45 | 90.45 |
| Bra017499.1-P | Field mustard | cytosol | 90.0 | 90.0 |
| CDY25982 | Canola | cytosol | 90.0 | 90.0 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 65.0 | 65.3 |
| PGSC0003DMT400067515 | Potato | nucleus | 63.64 | 63.64 |
| Solyc08g078000.2.1 | Tomato | nucleus | 63.18 | 63.18 |
| KRH04206 | Soybean | cytosol | 63.64 | 63.06 |
| KRH57501 | Soybean | plasma membrane | 60.45 | 63.03 |
| PGSC0003DMT400052797 | Potato | cytosol | 59.55 | 60.93 |
| Solyc08g007200.2.1 | Tomato | unclear | 59.55 | 60.93 |
| KRH77304 | Soybean | plasma membrane, vacuole | 63.18 | 55.82 |
| GSMUA_Achr11P... | Banana | cytosol | 57.27 | 54.78 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 55.91 | 52.79 |
| Os10t0549100-01 | Rice | plasma membrane | 55.0 | 51.93 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 54.09 | 51.29 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 54.09 | 51.29 |
| TraesCS6D01G224100.1 | Wheat | cytosol, golgi, plasma membrane | 54.09 | 51.29 |
| Os02t0652550-00 | Rice | cytosol | 55.91 | 46.07 |
| AT2G23830.1 | Thale cress | cytosol | 28.64 | 42.28 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 55.0 | 41.58 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 44.09 | 40.59 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 55.0 | 40.07 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 55.0 | 39.03 |
| AT2G45140.1 | Thale cress | cytosol | 42.27 | 38.91 |
| Zm00001d014260_P001 | Maize | plastid | 30.91 | 38.2 |
| EES05798 | Sorghum | plastid | 55.45 | 37.65 |
| AT3G60600.1 | Thale cress | cytosol | 42.27 | 36.33 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 43.18 | 27.3 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 31.82 | 26.12 |
| AT1G08820.3 | Thale cress | cytosol | 37.73 | 21.5 |
| AT1G51270.3 | Thale cress | cytosol | 34.55 | 11.93 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:834764 | UniProt:A0A178UAE4 | ProteinID:AED95480.1 | ProteinID:AED95481.1 |
| ArrayExpress:AT5G47180 | EnsemblPlantsGene:AT5G47180 | RefSeq:AT5G47180 | TAIR:AT5G47180 | RefSeq:AT5G47180-TAIR-G | EnsemblPlants:AT5G47180.1 |
| TAIR:AT5G47180.1 | EMBL:AY035160 | EMBL:AY063031 | EMBL:AY085274 | ProteinID:BAA97151.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | RefSeq:NP_199529.1 | RefSeq:NP_851144.1 | ProteinID:OAO89641.1 | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF42 | InterPro:PapD-like_sf | UniProt:Q9LVU1 | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI00000A7EB5 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
Coordinates
chr5:-:19161009..19163980
Molecular Weight (calculated)
24668.6 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.508
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.