Factsheet for AT3G60600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	84.77	90.42
CDX67837	Canola	cytosol, golgi, plasma membrane	84.77	90.42
CDX89063	Canola	cytosol, golgi, plasma membrane	83.98	89.96
CDX71796	Canola	cytosol	83.2	89.5
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	83.2	89.12
CDY48365	Canola	cytosol	83.2	89.12
CDY41153	Canola	cytosol	82.81	89.08
Bra007547.1-P	Field mustard	cytosol	82.03	88.24
AT2G45140.1	Thale cress	cytosol	77.34	82.85
AT2G23830.1	Thale cress	cytosol	41.8	71.81
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	66.8	71.55
KRH76164	Soybean	endoplasmic reticulum	64.45	68.46
KRH65384	Soybean	cytosol	64.06	68.05
Zm00001d049553_P001	Maize	plasma membrane	58.2	61.07
Os08t0156700-01	Rice	plasma membrane	57.42	60.49
EES14570	Sorghum	cytosol, nucleus, plasma membrane	57.03	59.84
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	55.47	59.41
GSMUA_Achr5P20880_001	Banana	cytosol	55.47	59.41
TraesCS7D01G296400.1	Wheat	cytosol	56.25	59.26
TraesCS7A01G300700.1	Wheat	cytosol	56.25	59.26
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	54.3	58.16
GSMUA_Achr1P20280_001	Banana	cytosol	48.44	57.94
EES12559	Sorghum	cytosol	56.25	57.83
Os04t0534400-01	Rice	cytosol	55.86	57.2
HORVU2Hr1G091830.4	Barley	cytosol	54.3	55.82
TraesCS2A01G368500.1	Wheat	cytosol	54.3	55.82
TraesCS2B01G385700.2	Wheat	cytosol	53.91	55.42
TraesCS2D01G365300.2	Wheat	cytosol	53.52	55.02
Zm00001d017390_P001	Maize	cytosol	48.05	54.67
Zm00001d051288_P001	Maize	cytosol	47.66	54.22
KXG31128	Sorghum	cytosol	46.88	53.33
TraesCS6D01G220300.1	Wheat	cytosol	46.48	52.19
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	46.09	51.75
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	46.09	51.75
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	45.7	51.32
GSMUA_Achr8P11120_001	Banana	cytosol	55.08	50.36
GSMUA_Achr11P...	Banana	cytosol	38.67	49.5
HORVU7Hr1G071270.2	Barley	mitochondrion	55.86	48.47
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	55.08	47.32
Os02t0643000-01	Rice	plasma membrane	47.66	47.1
AT5G47180.1	Thale cress	cytosol	36.33	42.27
Zm00001d036342_P001	Maize	cytosol	38.28	39.2
AT1G08820.3	Thale cress	cytosol	40.62	26.94
AT1G51270.3	Thale cress	cytosol	52.34	21.04

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:825231	UniProt:A0A178VEY8	ProteinID:AEE80086.1	ProteinID:AEE80087.1
ProteinID:AEE80088.1	EMBL:AK317675	ArrayExpress:AT3G60600	EnsemblPlantsGene:AT3G60600	RefSeq:AT3G60600	TAIR:AT3G60600
RefSeq:AT3G60600-TAIR-G	EnsemblPlants:AT3G60600.1	TAIR:AT3G60600.1	EMBL:AY065144	EMBL:AY085922	EMBL:AY364005
Unigene:At.4705	EMBL:BT006297	EMBL:BX822165	EMBL:BX824970	ProteinID:CAB82664.1	ncoils:Coil
GO:GO:0000326	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783	GO:GO:0005789
GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016032	GO:GO:0032586	GO:GO:0046907	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	RefSeq:NP_001030903.1	RefSeq:NP_001030904.1	RefSeq:NP_567101.1	ProteinID:OAP03935.1
PFAM:PF00635	PIRSF:PIRSF019693	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf
UniProt:Q8VZ95	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00000A39D1	InterPro:VAP	Symbol:VAP27-1
SEG:seg	:	:	:	:	:

Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]

Coordinates

chr3:+:22400110..22402724

Molecular Weight (calculated)

28474.3 Da

IEP (calculated)

8.608

GRAVY (calculated)

-0.422

Length

256 amino acids

Sequence
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.