Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G220300.1 | Wheat | cytosol | 97.81 | 97.81 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 97.81 | 97.81 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 94.3 | 94.3 |
| KXG31128 | Sorghum | cytosol | 69.74 | 70.67 |
| Zm00001d017390_P001 | Maize | cytosol | 68.86 | 69.78 |
| Zm00001d051288_P001 | Maize | cytosol | 66.67 | 67.56 |
| Os02t0643000-01 | Rice | plasma membrane | 74.12 | 65.25 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 64.04 | 58.63 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 60.09 | 57.32 |
| Solyc01g090910.2.1 | Tomato | nucleus | 56.58 | 55.36 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 57.89 | 55.23 |
| Solyc10g018350.1.1 | Tomato | cytosol | 56.14 | 53.78 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 56.14 | 53.56 |
| KRH76164 | Soybean | endoplasmic reticulum | 56.14 | 53.11 |
| KRH65384 | Soybean | cytosol | 55.7 | 52.7 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 55.7 | 52.26 |
| AT2G23830.1 | Thale cress | cytosol | 33.77 | 51.68 |
| Bra003313.1-P | Field mustard | cytosol | 50.0 | 51.12 |
| AT2G45140.1 | Thale cress | cytosol | 53.51 | 51.05 |
| CDX71796 | Canola | cytosol | 53.07 | 50.84 |
| CDY41153 | Canola | cytosol | 53.07 | 50.84 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 53.07 | 50.63 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 53.07 | 50.63 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 53.51 | 50.62 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 52.63 | 50.42 |
| CDY48365 | Canola | cytosol | 52.63 | 50.21 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.63 | 50.21 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 52.63 | 50.0 |
| Bra007547.1-P | Field mustard | cytosol | 52.19 | 50.0 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.63 | 50.0 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 52.63 | 49.79 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.19 | 49.79 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 52.19 | 49.79 |
| CDY57247 | Canola | cytosol | 52.19 | 49.58 |
| CDY56247 | Canola | cytosol | 52.19 | 49.58 |
| GSMUA_Achr11P... | Banana | cytosol | 43.42 | 49.5 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 48.25 | 48.46 |
| Solyc06g034220.2.1 | Tomato | nucleus | 46.05 | 46.26 |
| PGSC0003DMT400066920 | Potato | cytosol | 53.95 | 46.07 |
| AT3G60600.1 | Thale cress | cytosol | 51.32 | 45.7 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 54.82 | 44.64 |
| Zm00001d036342_P001 | Maize | cytosol | 44.74 | 40.8 |
| TraesCS6A01G247700.1 | Wheat | cytosol | 41.23 | 40.17 |
| PGSC0003DMT400076826 | Potato | cytosol | 10.53 | 40.0 |
| Bra035442.1-P | Field mustard | cytosol | 17.98 | 37.96 |
| TraesCS7A01G540500.1 | Wheat | cytosol, extracellular, peroxisome | 25.0 | 37.5 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 16.67 | 37.25 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 37.72 | 37.07 |
| TraesCS2A01G412000.1 | Wheat | cytosol, plastid | 38.6 | 36.36 |
| TraesCS2A01G024800.2 | Wheat | cytosol, nucleus, plastid | 23.68 | 36.24 |
| TraesCS3A01G467600.2 | Wheat | cytosol | 42.54 | 26.72 |
| AT1G51270.3 | Thale cress | cytosol | 41.67 | 14.91 |
| TraesCS7A01G540300.1 | Wheat | cytosol | 26.32 | 12.45 |
| TraesCS5A01G444900.1 | Wheat | cytosol | 25.44 | 11.91 |
| TraesCS7A01G540200.3 | Wheat | cytosol | 30.26 | 10.9 |
| TraesCS4A01G476000.1 | Wheat | cytosol | 21.93 | 10.82 |
| TraesCS7A01G539900.1 | Wheat | cytosol | 32.89 | 9.54 |
| TraesCS7A01G541400.1 | Wheat | cytosol | 32.46 | 7.64 |
| TraesCS6A01G004500.1 | Wheat | cytosol | 23.68 | 6.8 |
| TraesCS5A01G524700.2 | Wheat | nucleus | 25.44 | 5.89 |
| TraesCS4A01G479800.1 | Wheat | cytosol | 28.95 | 4.62 |
| TraesCS4A01G497800.1 | Wheat | cytosol | 28.51 | 4.59 |
| TraesCS4A01G309200.1 | Wheat | cytosol, nucleus, plasma membrane | 34.21 | 3.84 |
| TraesCS5A01G445000.1 | Wheat | cytosol | 7.46 | 3.37 |
| TraesCS7A01G540700.1 | Wheat | plasma membrane | 3.95 | 2.64 |
| TraesCS6A01G269800.1 | Wheat | cytosol | 2.19 | 1.83 |
| TraesCS7A01G540400.2 | Wheat | cytosol | 1.32 | 1.03 |
| TraesCS3A01G073900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF87 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G237600 | EnsemblPlants:TraesCS6A01G237600.1 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:446783755..446787303
Molecular Weight (calculated)
25815.1 Da
IEP (calculated)
6.064
GRAVY (calculated)
-0.333
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEPRELLG IDPNELRFAF ELQKQISCSL HLTNRTDQYI AFKVKTTSPK KYCVRPNNGI VAPRSTFDVL VTMQAQREAP PDMQCRDKFL VQSAVVSQDI
101: APKDINGDMF TKESGNVVDE VKLQVVYAPP SKPTSVNEGS DQESLGSWSY QETTRELAEP ETIPSDPLAL ILKLMKEEKN FAVQENNKLR EELRLLRREI
201: SRQNVGFSLF FVLVAAILGV LLGFFMKR
101: APKDINGDMF TKESGNVVDE VKLQVVYAPP SKPTSVNEGS DQESLGSWSY QETTRELAEP ETIPSDPLAL ILKLMKEEKN FAVQENNKLR EELRLLRREI
201: SRQNVGFSLF FVLVAAILGV LLGFFMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.