Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G499900.1 | |
| TraesCS7A01G000300.1 | |
| TraesCS7D01G000200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19875.1 | TraesCS4A01G499900.1 | AT1G01010.1 | 21798944 |
| AT5G19875.1 | TraesCS7A01G000300.1 | AT1G01010.1 | 21798944 |
| AT5G19875.1 | TraesCS7D01G000200.1 | AT1G01010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 100.0 | 100.0 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 96.15 | 96.15 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 80.77 | 75.54 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 67.69 | 68.75 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 67.69 | 65.67 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 45.38 | 56.73 |
| KRH43573 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 53.08 | 56.1 |
| KRH13847 | Soybean | plasma membrane | 52.31 | 54.84 |
| CDY42077 | Canola | endoplasmic reticulum | 50.0 | 54.62 |
| Bra005617.1-P | Field mustard | endoplasmic reticulum | 50.0 | 54.62 |
| PGSC0003DMT400074570 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 49.23 | 54.24 |
| VIT_13s0156g00100.t01 | Wine grape | plasma membrane | 50.77 | 53.23 |
| Solyc10g044880.1.1 | Tomato | plasma membrane | 45.38 | 53.15 |
| CDY60509 | Canola | plasma membrane | 48.46 | 52.94 |
| PGSC0003DMT400041206 | Potato | plasma membrane | 44.62 | 52.25 |
| AT2G31940.1 | Thale cress | endoplasmic reticulum, plasma membrane | 47.69 | 51.67 |
| VIT_06s0004g01050.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 32.31 | 50.0 |
| CDY68096 | Canola | plasma membrane | 43.08 | 45.53 |
| AT5G19875.1 | Thale cress | plasma membrane | 43.08 | 45.53 |
| Bra002268.1-P | Field mustard | plasma membrane | 43.08 | 45.53 |
| KRH14864 | Soybean | endoplasmic reticulum | 40.77 | 42.74 |
| Bra006523.1-P | Field mustard | plasma membrane | 40.0 | 42.28 |
| CDX70897 | Canola | plasma membrane | 40.0 | 42.28 |
| CDX88869 | Canola | plasma membrane | 40.0 | 42.28 |
| KRH73209 | Soybean | extracellular, mitochondrion, plasma membrane | 41.54 | 32.14 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G236400.1 | EnsemblPlantsGene:TraesCS5D01G236400 | PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:344873835..344874527
Molecular Weight (calculated)
14347.6 Da
IEP (calculated)
6.232
GRAVY (calculated)
0.412
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSYSNGGS SSGHLQAPEL PLHLCFFLLV LFVFLGFSWY MSYESVAETF ADQGKLLLMV SPLALLLAVR LLSGGDGDGR RVDQLMSMSM PERDSIHRAG
101: GSPWGVGLLL VLLIVMVSYQ SNFRERWFAL
101: GSPWGVGLLL VLLIVMVSYQ SNFRERWFAL
001: MGRDQEGSPP VPLHLCVFVL ILLMFVTISW YASYEPVIEG FTYQFKLALM ASPLLLLLAV HFLSDDQGVG GMMTSLIHLN ERESLYRAGG TPWGVAFMLV
101: FLFFMVSYQS QFQERWFPLR
101: FLFFMVSYQS QFQERWFPLR
Arabidopsis Description
Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.