Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42077 | Canola | endoplasmic reticulum | 95.8 | 95.8 |
| AT2G31940.1 | Thale cress | endoplasmic reticulum, plasma membrane | 91.6 | 90.83 |
| KRH43573 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 62.18 | 60.16 |
| VIT_13s0156g00100.t01 | Wine grape | plasma membrane | 60.5 | 58.06 |
| KRH13847 | Soybean | plasma membrane | 60.5 | 58.06 |
| PGSC0003DMT400074570 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 51.26 | 51.69 |
| Solyc10g044880.1.1 | Tomato | plasma membrane | 47.06 | 50.45 |
| PGSC0003DMT400041206 | Potato | plasma membrane | 46.22 | 49.55 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 52.94 | 48.46 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 52.94 | 48.46 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 52.1 | 47.69 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 51.26 | 47.66 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 41.18 | 47.12 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.26 | 45.52 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 50.42 | 43.17 |
| CDY68096 | Canola | plasma membrane | 38.66 | 37.4 |
| CDX88869 | Canola | plasma membrane | 38.66 | 37.4 |
| CDX70897 | Canola | plasma membrane | 38.66 | 37.4 |
Protein Annotations
| EnsemblPlants:CDY60509 | EnsemblPlantsGene:GSBRNA2T00029714001 | GO:A0A078J3M3 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | ProteinID:CDY60509 | ProteinID:CDY60509.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EC84C2 | UniProt:A0A078J3M3 | MapMan:35.2 | : | : | : |
Description
BnaC04g54210DBnaC04g54210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3M3]
Coordinates
chrLK033888:-:2188..2547
Molecular Weight (calculated)
13436.7 Da
IEP (calculated)
5.542
GRAVY (calculated)
0.561
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDHEGSPP VPLHLCVFVL ILLMFVTISW YASYEPIIEG LTDQLKLALM ASPLLLLLAV HFLSNGEGGG MVTSLIPLNE RESLYRAGGT PWGVAFMLVF
101: LFFMVSYQSQ FQERWFPLR
101: LFFMVSYQSQ FQERWFPLR
001: MGRDQEGSPP VPLHLCVFVL ILLMFVTISW YASYEPVIEG FTYQFKLALM ASPLLLLLAV HFLSDDQGVG GMMTSLIHLN ERESLYRAGG TPWGVAFMLV
101: FLFFMVSYQS QFQERWFPLR
101: FLFFMVSYQS QFQERWFPLR
Arabidopsis Description
Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.