Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- plasma membrane 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g01050.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 45.16 | 66.67 |
| KRH43573 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 61.29 | 61.79 |
| Bra005617.1-P | Field mustard | endoplasmic reticulum | 58.06 | 60.5 |
| CDY42077 | Canola | endoplasmic reticulum | 58.06 | 60.5 |
| CDY60509 | Canola | plasma membrane | 58.06 | 60.5 |
| KRH13847 | Soybean | plasma membrane | 59.68 | 59.68 |
| AT2G31940.1 | Thale cress | endoplasmic reticulum, plasma membrane | 57.26 | 59.17 |
| PGSC0003DMT400074570 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 53.23 | 55.93 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 46.77 | 55.77 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 53.23 | 50.77 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 53.23 | 50.77 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 52.42 | 50.0 |
| PGSC0003DMT400041206 | Potato | plasma membrane | 44.35 | 49.55 |
| Solyc10g044880.1.1 | Tomato | plasma membrane | 44.35 | 49.55 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.61 | 47.76 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 50.81 | 45.32 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 46.77 | 45.31 |
Protein Annotations
| ArrayExpress:VIT_13s0156g00100 | EMBL:FN596003 | EnsemblPlants:VIT_13s0156g00100.t01 | EnsemblPlantsGene:VIT_13s0156g00100 | EntrezGene:100855367 | EntrezGene:LOC100855367 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | ProteinID:CCB56678 |
| ProteinID:CCB56678.1 | RefSeq:XP_003633595 | RefSeq:XP_003633595.1 | SEG:seg | TMHMM:TMhelix | unigene:Vvi.7833 |
| UniParc:UPI00015CC8CF | UniProt:F6HPS2 | wikigene:100855367 | wikigene:LOC100855367 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr13:+:23869564..23870145
Molecular Weight (calculated)
14505.9 Da
IEP (calculated)
7.052
GRAVY (calculated)
0.490
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDHYSSAQ SDQPLPLHLC CFLAILFMFI AFSWYINYEP VLDSMFDQLK LILMVSPLLL LLAVHWLSSD LGRQFPSLIP LPQRDSLHRA GGTPWGVGFL
101: LVFFFFMISY QSYFHERWFP LLSR
101: LVFFFFMISY QSYFHERWFP LLSR
001: MGRDQEGSPP VPLHLCVFVL ILLMFVTISW YASYEPVIEG FTYQFKLALM ASPLLLLLAV HFLSDDQGVG GMMTSLIHLN ERESLYRAGG TPWGVAFMLV
101: FLFFMVSYQS QFQERWFPLR
101: FLFFMVSYQS QFQERWFPLR
Arabidopsis Description
Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.