Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19875.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0156g00100.t01 | Wine grape | plasma membrane | 55.77 | 46.77 |
| KRH43573 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 53.85 | 45.53 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 56.73 | 45.38 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 56.73 | 45.38 |
| KRH13847 | Soybean | plasma membrane | 53.85 | 45.16 |
| PGSC0003DMT400074570 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 44.07 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 54.81 | 43.85 |
| Solyc10g044880.1.1 | Tomato | plasma membrane | 46.15 | 43.24 |
| PGSC0003DMT400041206 | Potato | plasma membrane | 45.19 | 42.34 |
| VIT_06s0004g01050.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 33.65 | 41.67 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 50.96 | 41.41 |
| CDY60509 | Canola | plasma membrane | 47.12 | 41.18 |
| AT2G31940.1 | Thale cress | endoplasmic reticulum, plasma membrane | 47.12 | 40.83 |
| CDY42077 | Canola | endoplasmic reticulum | 46.15 | 40.34 |
| Bra005617.1-P | Field mustard | endoplasmic reticulum | 46.15 | 40.34 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 53.85 | 40.29 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 38.81 |
| CDY68096 | Canola | plasma membrane | 44.23 | 37.4 |
| Bra002268.1-P | Field mustard | plasma membrane | 44.23 | 37.4 |
| KRH14864 | Soybean | endoplasmic reticulum | 44.23 | 37.1 |
| AT5G19875.1 | Thale cress | plasma membrane | 39.42 | 33.33 |
| CDX88869 | Canola | plasma membrane | 38.46 | 32.52 |
| CDX70897 | Canola | plasma membrane | 38.46 | 32.52 |
| Bra006523.1-P | Field mustard | plasma membrane | 38.46 | 32.52 |
| KRH73209 | Soybean | extracellular, mitochondrion, plasma membrane | 44.23 | 27.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P20200_001 | EnsemblPlants:GSMUA_Achr3T20200_001 | EnsemblPlantsGene:GSMUA_Achr3G20200_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295A819 | UniProt:M0SG86 |
| MapMan:35.2 | : | : | : | : | : |
Description
oxidoreductase/ transition metal ion binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G20200_001]
Coordinates
chr3:+:21410615..21411237
Molecular Weight (calculated)
12398.1 Da
IEP (calculated)
7.584
GRAVY (calculated)
0.246
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MANGYYYQSG PYYYNPSYAQ SPPLPLHLCF FLLTLFMFIG LSWYMTYESV FESLFNQIKL LLMRDTFHRD GGSPWGVALA LVLLMFMISY QSYFHDRWFP
101: LLSR
101: LLSR
001: MGRDQEGSPP VPLHLCVFVL ILLMFVTISW YASYEPVIEG FTYQFKLALM ASPLLLLLAV HFLSDDQGVG GMMTSLIHLN ERESLYRAGG TPWGVAFMLV
101: FLFFMVSYQS QFQERWFPLR
101: FLFFMVSYQS QFQERWFPLR
Arabidopsis Description
Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.