CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, mitochondrion

Predictor Summary:

plastid 2
extracellular 2
plasma membrane 3
mitochondrion 2
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, plasma membrane
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06324
KRH06326
KRH06327
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH47747
KRH47748
KRH47750
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19875.1	KRH06324	AT1G01010.1	21798944
AT5G19875.1	KRH06326	AT1G01010.1	21798944
AT5G19875.1	KRH06327	AT1G01010.1	21798944
AT5G19875.1	KRH47747	AT1G01010.1	21798944
AT5G19875.1	KRH47748	AT1G01010.1	21798944
AT5G19875.1	KRH47750	AT1G01010.1	21798944
AT5G19875.1	KRH11076	AT4G19030.1	21798944
AT5G19875.1	KRH21197	AT4G19030.1	21798944
AT5G19875.1	KRH42923	AT4G19030.1	21798944
AT5G19875.1	KRH42926	AT4G19030.1	21798944
AT5G19875.1	KRH45251	AT4G19030.1	21798944
AT5G19875.1	KRH59035	AT4G19030.1	21798944
AT5G19875.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14864	Soybean	endoplasmic reticulum	71.43	96.77
VIT_06s0004g01050.t01	Wine grape	endoplasmic reticulum, plasma membrane	29.76	59.52
KRH43573	Soybean	endoplasmic reticulum, plasma membrane, vacuole	37.5	51.22
CDY68096	Canola	plasma membrane	36.9	50.41
KRH13847	Soybean	plasma membrane	36.9	50.0
Bra002268.1-P	Field mustard	plasma membrane	36.31	49.59
CDX70897	Canola	plasma membrane	36.31	49.59
Bra006523.1-P	Field mustard	plasma membrane	36.31	49.59
CDX88869	Canola	plasma membrane	35.71	48.78
AT5G19875.1	Thale cress	plasma membrane	35.71	48.78
EER96812	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	33.93	44.53
GSMUA_Achr3P20200_001	Banana	plasma membrane	27.38	44.23
Zm00001d020655_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	33.33	41.79
TraesCS5B01G229900.1	Wheat	plasma membrane	32.14	41.54
TraesCS5D01G236400.1	Wheat	plasma membrane	32.14	41.54
TraesCS5A01G231600.1	Wheat	plasma membrane	31.55	40.77
Os09t0445600-01	Rice	cytosol, plasma membrane, vacuole	31.55	38.13

Protein Annotations

EMBL:ACUP02001272	EnsemblPlants:KRH73209	EnsemblPlantsGene:GLYMA_02G258600	EntrezGene:100780743	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR33306	PANTHER:PTHR33306:SF10	ProteinID:KRH73209	ProteinID:KRH73209.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000296A8D7	UniProt:K7KAT3	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr2:+:44580131..44581457

Molecular Weight (calculated)

19772.5 Da

IEP (calculated)

7.787

GRAVY (calculated)

0.593

Length

168 amino acids

Sequence
(BLAST)

001: MTQQSLQIIK APRRIHTTHE TPSIPSFSLT FILTNIISLY FSLNMTRYHD PYYYYLWEYF SFPLHLIFFV LILFFVLAFS WYINYESLLE DLLVQVKIFL
101: ALVPLLLLLL VHCLSSGASF PIPLPEERES LHRAGGSPWG VALLLLFVLF MMAYQSSFHQ RWFPLATR

Best Arabidopsis Sequence Match ( AT5G19875.1 )
(BLAST)

001: MARSPYYGSS YLDYLSLPNP HLCFLFIVVF FVLSFTWYLN FESIIEDTLD HLKLVFIFTP LFLLLLVHFF SGGLSFYVPW PEQDSIHRAG SSPWGVAAVL
101: VLILFMVSYQ SDFQERWFPF GAK

Arabidopsis Description

At5g19875 [Source:UniProtKB/TrEMBL;Acc:Q8L9M7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.