Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- plasma membrane 5
- extracellular 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005951.1-P | |
| Bra012567.1-P | |
| Bra013361.1-P | |
| Bra033296.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19875.1 | Bra033296.1-P | AT1G01010.1 | 21798944 |
| AT5G19875.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT5G19875.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
| AT5G19875.1 | Bra005951.1-P | AT5G07730.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70897 | Canola | plasma membrane | 100.0 | 100.0 |
| CDX88869 | Canola | plasma membrane | 99.19 | 99.19 |
| Bra002268.1-P | Field mustard | plasma membrane | 84.55 | 84.55 |
| AT5G19875.1 | Thale cress | plasma membrane | 83.74 | 83.74 |
| VIT_06s0004g01050.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 34.96 | 51.19 |
| KRH14864 | Soybean | endoplasmic reticulum | 49.59 | 49.19 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 43.9 | 42.19 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 42.28 | 40.0 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 42.28 | 40.0 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 41.46 | 39.23 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 32.52 | 38.46 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 41.46 | 38.06 |
| Bra005617.1-P | Field mustard | endoplasmic reticulum | 36.59 | 37.82 |
| KRH73209 | Soybean | extracellular, mitochondrion, plasma membrane | 49.59 | 36.31 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 39.02 | 34.53 |
Protein Annotations
| EnsemblPlants:Bra006523.1 | EnsemblPlants:Bra006523.1-P | EnsemblPlantsGene:Bra006523 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253FFBE | UniProt:M4CQN4 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT5G19875 (E=2e-028) | unknown protein
Coordinates
chrA03:+:3904203..3904574
Molecular Weight (calculated)
14240.4 Da
IEP (calculated)
5.373
GRAVY (calculated)
0.668
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSPYYGSS YLDYLSLPNP HLCFFFMVVF FVFSFTWYLN YESILEDTMN NLKFFIILSP LFLLLLVHFF SGGLSLYVPL PEQDSIHHAG SSPWGVAAVL
101: VVILFMVSYQ SDIHEMWFPF GAK
101: VVILFMVSYQ SDIHEMWFPF GAK
001: MARSPYYGSS YLDYLSLPNP HLCFLFIVVF FVLSFTWYLN FESIIEDTLD HLKLVFIFTP LFLLLLVHFF SGGLSFYVPW PEQDSIHRAG SSPWGVAAVL
101: VLILFMVSYQ SDFQERWFPF GAK
101: VLILFMVSYQ SDFQERWFPF GAK
Arabidopsis Description
At5g19875 [Source:UniProtKB/TrEMBL;Acc:Q8L9M7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.