Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19875.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0156g00100.t01 | Wine grape | plasma membrane | 66.67 | 45.16 |
| KRH14864 | Soybean | endoplasmic reticulum | 59.52 | 40.32 |
| AT5G19875.1 | Thale cress | plasma membrane | 57.14 | 39.02 |
| CDY68096 | Canola | plasma membrane | 57.14 | 39.02 |
| Bra002268.1-P | Field mustard | plasma membrane | 55.95 | 38.21 |
| Bra006523.1-P | Field mustard | plasma membrane | 51.19 | 34.96 |
| CDX70897 | Canola | plasma membrane | 51.19 | 34.96 |
| CDX88869 | Canola | plasma membrane | 50.0 | 34.15 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 41.67 | 33.65 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 50.0 | 32.31 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 50.0 | 32.31 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.19 | 32.09 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 48.81 | 32.03 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 48.81 | 31.54 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 51.19 | 30.94 |
| KRH73209 | Soybean | extracellular, mitochondrion, plasma membrane | 59.52 | 29.76 |
Protein Annotations
| EntrezGene:100251830 | wikigene:100251830 | MapMan:35.2 | ProteinID:CCB43781 | ProteinID:CCB43781.1 | UniProt:F6GUG0 |
| EMBL:FN594951 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | EntrezGene:LOC100251830 | wikigene:LOC100251830 | PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | TMHMM:TMhelix |
| UniParc:UPI0002108F5D | ArrayExpress:VIT_06s0004g01050 | EnsemblPlantsGene:VIT_06s0004g01050 | EnsemblPlants:VIT_06s0004g01050.t01 | RefSeq:XP_002285673 | RefSeq:XP_002285673.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:1156314..1156963
Molecular Weight (calculated)
9815.4 Da
IEP (calculated)
7.696
GRAVY (calculated)
0.670
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MIEDLMDQLK LVLILSPLLL LLLLHILSSD QRQFIPFIIP LPDKDSLHRA GGSPWGVAFL LVFLLFMVSY KSYFQERWFP LLSR
001: MARSPYYGSS YLDYLSLPNP HLCFLFIVVF FVLSFTWYLN FESIIEDTLD HLKLVFIFTP LFLLLLVHFF SGGLSFYVPW PEQDSIHRAG SSPWGVAAVL
101: VLILFMVSYQ SDFQERWFPF GAK
101: VLILFMVSYQ SDFQERWFPF GAK
Arabidopsis Description
At5g19875 [Source:UniProtKB/TrEMBL;Acc:Q8L9M7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.