Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006523.1-P | Field mustard | plasma membrane | 83.74 | 83.74 |
| CDX70897 | Canola | plasma membrane | 83.74 | 83.74 |
| CDX88869 | Canola | plasma membrane | 82.93 | 82.93 |
| CDY68096 | Canola | plasma membrane | 82.11 | 82.11 |
| Bra002268.1-P | Field mustard | plasma membrane | 81.3 | 81.3 |
| VIT_06s0004g01050.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 39.02 | 57.14 |
| KRH14864 | Soybean | endoplasmic reticulum | 49.59 | 49.19 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 45.53 | 43.75 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 45.53 | 43.08 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 45.53 | 43.08 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 43.9 | 41.54 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 43.09 | 39.55 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 33.33 | 39.42 |
| AT2G31940.1 | Thale cress | endoplasmic reticulum, plasma membrane | 36.59 | 37.5 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 42.28 | 37.41 |
| KRH73209 | Soybean | extracellular, mitochondrion, plasma membrane | 48.78 | 35.71 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832109 | UniProt:A0A178UID4 | ProteinID:AED92760.1 | EMBL:AK119148 | ArrayExpress:AT5G19875 |
| EnsemblPlantsGene:AT5G19875 | RefSeq:AT5G19875 | TAIR:AT5G19875 | RefSeq:AT5G19875-TAIR-G | EnsemblPlants:AT5G19875.1 | TAIR:AT5G19875.1 |
| EMBL:AY088348 | EMBL:BT004721 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_568384.1 | ProteinID:OAO93415.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | UniProt:Q8L9M7 |
| TMHMM:TMhelix | UniParc:UPI000000C449 | SEG:seg | : | : | : |
Description
At5g19875 [Source:UniProtKB/TrEMBL;Acc:Q8L9M7]
Coordinates
chr5:+:6718206..6719303
Molecular Weight (calculated)
14334.4 Da
IEP (calculated)
5.445
GRAVY (calculated)
0.633
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSPYYGSS YLDYLSLPNP HLCFLFIVVF FVLSFTWYLN FESIIEDTLD HLKLVFIFTP LFLLLLVHFF SGGLSFYVPW PEQDSIHRAG SSPWGVAAVL
101: VLILFMVSYQ SDFQERWFPF GAK
101: VLILFMVSYQ SDFQERWFPF GAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.