Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60509 | Canola | plasma membrane | 90.83 | 91.6 |
| Bra005617.1-P | Field mustard | endoplasmic reticulum | 90.0 | 90.76 |
| CDY42077 | Canola | endoplasmic reticulum | 90.0 | 90.76 |
| KRH43573 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 58.54 |
| VIT_13s0156g00100.t01 | Wine grape | plasma membrane | 59.17 | 57.26 |
| KRH13847 | Soybean | plasma membrane | 58.33 | 56.45 |
| PGSC0003DMT400074570 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 49.17 | 50.0 |
| Solyc10g044880.1.1 | Tomato | plasma membrane | 45.0 | 48.65 |
| PGSC0003DMT400041206 | Potato | plasma membrane | 44.17 | 47.75 |
| TraesCS5B01G229900.1 | Wheat | plasma membrane | 51.67 | 47.69 |
| TraesCS5D01G236400.1 | Wheat | plasma membrane | 51.67 | 47.69 |
| GSMUA_Achr3P20200_001 | Banana | plasma membrane | 40.83 | 47.12 |
| TraesCS5A01G231600.1 | Wheat | plasma membrane | 50.83 | 46.92 |
| EER96812 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 46.88 |
| Zm00001d020655_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 50.83 | 45.52 |
| Os09t0445600-01 | Rice | cytosol, plasma membrane, vacuole | 48.33 | 41.73 |
| AT5G19875.1 | Thale cress | plasma membrane | 37.5 | 36.59 |
Protein Annotations
| MapMan:35.2 | EntrezGene:817752 | ProteinID:AAD32278.2 | ProteinID:AEC08605.1 | ArrayExpress:AT2G31940 | EnsemblPlantsGene:AT2G31940 |
| RefSeq:AT2G31940 | TAIR:AT2G31940 | RefSeq:AT2G31940-TAIR-G | EnsemblPlants:AT2G31940.1 | TAIR:AT2G31940.1 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_565731.1 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33306 | PANTHER:PTHR33306:SF10 | UniProt:Q9SKA6 |
| TMHMM:TMhelix | UniParc:UPI000009D860 | SEG:seg | : | : | : |
Description
Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6]
Coordinates
chr2:+:13580371..13581134
Molecular Weight (calculated)
13759.0 Da
IEP (calculated)
5.532
GRAVY (calculated)
0.530
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDQEGSPP VPLHLCVFVL ILLMFVTISW YASYEPVIEG FTYQFKLALM ASPLLLLLAV HFLSDDQGVG GMMTSLIHLN ERESLYRAGG TPWGVAFMLV
101: FLFFMVSYQS QFQERWFPLR
101: FLFFMVSYQS QFQERWFPLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.