CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78308
CDX78905
CDX81068
CDX89999
CDX98596
CDX99411
CDY01565
CDY15210
CDY15212
CDY15214
CDY15215

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19875.1	CDX89999	AT1G01010.1	21798944
AT5G19875.1	CDY15210	AT1G01010.1	21798944
AT5G19875.1	CDY15212	AT1G01010.1	21798944
AT5G19875.1	CDY15214	AT1G01010.1	21798944
AT5G19875.1	CDY15215	AT1G01010.1	21798944
AT5G19875.1	CDX78905	AT4G19030.1	21798944
AT5G19875.1	CDX98596	AT4G19030.1	21798944
AT5G19875.1	CDX99411	AT4G19030.1	21798944
AT5G19875.1	CDY01565	AT4G19030.1	21798944
AT5G19875.1	CDX78308	AT5G07730.1	21798944
AT5G19875.1	CDX81068	AT5G07730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002268.1-P	Field mustard	plasma membrane	99.19	99.19
CDX70897	Canola	plasma membrane	85.37	85.37
CDX88869	Canola	plasma membrane	84.55	84.55
AT5G19875.1	Thale cress	plasma membrane	82.11	82.11
VIT_06s0004g01050.t01	Wine grape	endoplasmic reticulum, plasma membrane	39.02	57.14
KRH14864	Soybean	endoplasmic reticulum	49.59	49.19
EER96812	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	46.34	44.53
GSMUA_Achr3P20200_001	Banana	plasma membrane	37.4	44.23
TraesCS5B01G229900.1	Wheat	plasma membrane	45.53	43.08
TraesCS5D01G236400.1	Wheat	plasma membrane	45.53	43.08
TraesCS5A01G231600.1	Wheat	plasma membrane	44.72	42.31
Zm00001d020655_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	45.53	41.79
CDY42077	Canola	endoplasmic reticulum	38.21	39.5
CDY60509	Canola	plasma membrane	37.4	38.66
Os09t0445600-01	Rice	cytosol, plasma membrane, vacuole	42.28	37.41
KRH73209	Soybean	extracellular, mitochondrion, plasma membrane	50.41	36.9

Protein Annotations

EnsemblPlants:CDY68096	EnsemblPlantsGene:GSBRNA2T00069240001	GO:A0A078JQZ1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33306	PANTHER:PTHR33306:SF10	ProteinID:CDY68096	ProteinID:CDY68096.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEEF44	UniProt:A0A078JQZ1	MapMan:35.2	:	:	:

Description

BnaA10g29680DBnaA10g29680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQZ1]

Coordinates

chrLK036851:+:311..998

Molecular Weight (calculated)

14351.5 Da

IEP (calculated)

4.619

GRAVY (calculated)

0.561

Length

123 amino acids

Sequence
(BLAST)

001: MERSPYYGSS YLDYLSLPDP HVCFFFMVVF FVLSLTWYLN YESVLEDTMN QLKLVFMLSP LFLLLLVHIF SGGLSFYVPW PEQDSIHRAG SSPWGVATVL
101: VIILFMVSYQ SDIHEMWFPF GAR

Best Arabidopsis Sequence Match ( AT5G19875.1 )
(BLAST)

001: MARSPYYGSS YLDYLSLPNP HLCFLFIVVF FVLSFTWYLN FESIIEDTLD HLKLVFIFTP LFLLLLVHFF SGGLSFYVPW PEQDSIHRAG SSPWGVAAVL
101: VLILFMVSYQ SDFQERWFPF GAK

Arabidopsis Description

At5g19875 [Source:UniProtKB/TrEMBL;Acc:Q8L9M7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.