CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72470
CDX79784
CDX79817
CDX81754
CDX81802
CDX83441
CDX83927
CDX84893
CDX85185
CDX86450
CDX95070
CDX95587
CDX96580
CDX96793
CDX98068
CDY00395
CDY01319
CDY04006
CDY04659
CDY05788
CDY08189
CDY15996
CDY16255
CDY17888
CDY17920
CDY20664
CDY21049
CDY21766
CDY22146
CDY23416
CDY26562
CDY28006
CDY29762
CDY30076
CDY30454
CDY31053
CDY31264
CDY31941
CDY32939
CDY33349
CDY35073
CDY35975
CDY38817
CDY45796
CDY49754
CDY52847
CDY55447
CDY57928
CDY58529
CDY59304
CDY63742
CDY68514

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01010.1	CDY20664	AT1G10030.1	21798944
AT1G01010.1	CDY31053	AT1G10030.1	21798944
AT1G01010.1	CDY57928	AT1G10030.1	21798944
AT1G01010.1	CDY63742	AT1G10030.1	21798944
AT1G01010.1	CDX98068	AT1G12390.1	21798944
AT1G01010.1	CDY15996	AT1G12390.1	21798944
AT1G01010.1	CDY21049	AT1G12390.1	21798944
AT1G01010.1	CDY26562	AT1G12390.1	21798944
AT1G01010.1	CDY30076	AT1G12390.1	21798944
AT1G01010.1	CDY31264	AT1G12390.1	21798944
AT1G01010.1	CDX81754	AT1G16240.1	21798944
AT1G01010.1	CDY33349	AT1G16240.1	21798944
AT1G01010.1	CDY35073	AT1G16240.1	21798944
AT1G01010.1	CDY52847	AT1G16240.1	21798944
AT1G01010.1	CDX81802	AT1G17080.1	21798944
AT1G01010.1	CDX83927	AT1G17080.1	21798944
AT1G01010.1	CDX96793	AT1G17080.1	21798944
AT1G01010.1	CDY21766	AT1G17080.1	21798944
AT1G01010.1	CDX96580	AT1G77350.1	21798944
AT1G01010.1	CDY00395	AT1G77350.1	21798944
AT1G01010.1	CDY01319	AT1G77350.1	21798944
AT1G01010.1	CDY04659	AT1G77350.1	21798944
AT1G01010.1	CDY08189	AT1G77350.1	21798944
AT1G01010.1	CDY38817	AT1G77350.1	21798944
AT1G01010.1	CDY05788	AT2G20740.1	21798944
AT1G01010.1	CDY31941	AT2G20740.1	21798944
AT1G01010.1	CDY55447	AT2G32380.1	21798944
AT1G01010.1	CDY68514	AT2G32380.1	21798944
AT1G01010.1	CDX79817	AT2G43510.1	21798944
AT1G01010.1	CDY17920	AT2G43510.1	21798944
AT1G01010.1	CDY58529	AT2G43510.1	21798944
AT1G01010.1	CDX79784	AT2G44080.1	21798944
AT1G01010.1	CDX83441	AT2G44080.1	21798944
AT1G01010.1	CDX95587	AT2G44080.1	21798944
AT1G01010.1	CDY17888	AT2G44080.1	21798944
AT1G01010.1	CDY23416	AT2G44080.1	21798944
AT1G01010.1	CDY30454	AT2G44080.1	21798944
AT1G01010.1	CDY22146	AT3G07950.1	21798944
AT1G01010.1	CDY28006	AT3G07950.1	21798944
AT1G01010.1	CDY35975	AT3G07950.1	21798944
AT1G01010.1	CDX72470	AT3G28080.1	21798944
AT1G01010.1	CDX85185	AT3G28080.1	21798944
AT1G01010.1	CDX86450	AT3G28080.1	21798944
AT1G01010.1	CDX95070	AT3G28080.1	21798944
AT1G01010.1	CDY04006	AT3G28080.1	21798944
AT1G01010.1	CDY49754	AT3G28080.1	21798944
AT1G01010.1	CDY16255	AT4G14730.1	21798944
AT1G01010.1	CDY29762	AT4G14730.1	21798944
AT1G01010.1	CDY32939	AT5G43460.1	21798944
AT1G01010.1	CDY59304	AT5G43460.1	21798944
AT1G01010.1	CDX84893	AT5G51010.1	21798944
AT1G01010.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89999	Canola	nucleus	62.59	56.0
AT1G01010.1	Thale cress	nucleus	44.71	44.29
CDY15210	Canola	cytosol, nucleus, plastid	26.12	42.86
CDY15212	Canola	nucleus	41.65	41.65
CDY15214	Canola	nucleus	28.47	40.88
CDY15223	Canola	nucleus	16.94	33.96
CDY15220	Canola	nucleus	16.0	33.66
CDY55326	Canola	nucleus	18.59	32.64
CDY32449	Canola	nucleus	17.18	32.59
CDY55325	Canola	nucleus	19.29	32.28
CDY32450	Canola	nucleus	16.94	32.14
CDX89994	Canola	nucleus	18.59	31.47
CDY11741	Canola	nucleus	10.12	30.94
CDX90132	Canola	nucleus	8.94	30.89
CDY59815	Canola	cytosol	19.06	30.34
CDX89991	Canola	nucleus	18.35	29.0
CDY07138	Canola	nucleus	18.59	27.43
CDY59814	Canola	cytosol	25.41	25.41
CDY07136	Canola	cytosol	25.41	25.35
CDX97252	Canola	cytosol	25.41	25.29
CDX89995	Canola	nucleus	20.71	24.79
CDY07135	Canola	nucleus	21.41	24.53
KRH06324	Soybean	cytosol	15.29	24.34
CDY15221	Canola	cytosol, nucleus, peroxisome	22.59	22.59
CDX89990	Canola	nucleus	20.94	22.47
CDY15224	Canola	cytosol	19.76	22.46
KRH47750	Soybean	cytosol	16.0	22.08
CDY15218	Canola	nucleus	18.59	21.64
CDY01928	Canola	cytosol, nucleus, vacuole	24.47	21.4
CDX89993	Canola	nucleus	23.06	20.98
CDX89996	Canola	nucleus	12.71	20.93
CDY59812	Canola	cytosol	22.12	20.84
CDY15225	Canola	nucleus	18.12	19.3
KRH47748	Soybean	cytosol	18.35	19.26
KRH06326	Soybean	nucleus	18.82	18.56
Os06t0101800-01	Rice	nucleus	15.53	18.38
KRH06327	Soybean	cytosol	17.18	18.25
CDY15217	Canola	nucleus	13.41	16.33
KRH47747	Soybean	nucleus	17.65	15.09
TraesCS7A01G000300.1	Wheat	nucleus	16.94	13.64
HORVU7Hr1G000910.1	Barley	nucleus	16.71	13.4
TraesCS7D01G000200.1	Wheat	plastid	17.41	13.19
TraesCS4A01G499900.1	Wheat	plastid	17.18	12.67
Zm00001d045617_P001	Maize	nucleus, plasma membrane, vacuole	15.06	10.47
EER87676	Sorghum	plastid	15.53	10.23
CDY07137	Canola	extracellular, plasma membrane	6.82	9.24

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:A0A078FL96	UniProt:A0A078FL96	EnsemblPlants:CDY15215	ProteinID:CDY15215
ProteinID:CDY15215.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00085407001	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF57	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI0004EEA10D
SEG:seg	:	:	:	:	:

Description

BnaC05g00940DBnaC05g00940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL96]

Coordinates

chrLK032052:-:515036..517211

Molecular Weight (calculated)

48517.6 Da

IEP (calculated)

6.155

GRAVY (calculated)

-0.662

Length

425 amino acids

Sequence
(BLAST)

001: MEEKPGFEFR PHDEELVGFY LRQKLLGNHS LVDGVIRDIK ICSLDPWDLR FQSKIKSRDP FWYFLSRIEN SGGRQSRTTP SGSWKLTGDP VYVNDRWGNL
101: TGFRGKIGYK RVLTFSKGKS SSSSSSISEW VMHELHYTHT DLPEHKRSTY VICRLEYKGD DVTILSVPPS VANSASSVVD QSLQGNSGHY NTLSEYDSGH
201: QFNGNYDMQQ SFQGYSEYFN PTSDYGLANQ SYWFGNLQQQ VPYSAPYQDH SDMLLRQVVE ENFPFLVDER TCMREDPSHH RPKNPITGIL PGDSSDDDTD
301: STIGRGTWSS TDSVGSKDGT YHTPIDATPS VSTVEPLHNH EPQEQPKQLE LQLQGKEKVI NKQQRECEWK MADDWIKKAP STSAVKQSWI VLEDISQKNS
401: RWIYLKNIIG LLLFIIIIGW IILVG

Best Arabidopsis Sequence Match ( AT1G01010.1 )
(BLAST)

001: MEDQVGFGFR PNDEELVGHY LRNKIEGNTS RDVEVAISEV NICSYDPWNL RFQSKYKSRD AMWYFFSRRE NNKGNRQSRT TVSGKWKLTG ESVEVKDQWG
101: FCSEGFRGKI GHKRVLVFLD GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS SAGSVVNQSR QRNSGSYNTY
201: SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS
301: GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL
401: ENAQWNYLKN MIIGVLLFIS VISWIILVG

Arabidopsis Description

NAC001NAC domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.