Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004768.1-P | Field mustard | extracellular | 98.86 | 98.86 |
| CDX79817 | Canola | extracellular | 98.86 | 98.86 |
| AT2G43510.1 | Thale cress | extracellular | 84.09 | 83.15 |
| CDY58529 | Canola | extracellular, nucleus, plasma membrane | 88.64 | 61.9 |
| CDX83478 | Canola | extracellular | 62.5 | 61.8 |
| CDX83479 | Canola | extracellular | 63.64 | 60.22 |
| CDY44232 | Canola | extracellular | 54.55 | 59.26 |
| CDY23374 | Canola | extracellular | 65.91 | 59.18 |
| CDY30415 | Canola | extracellular | 67.05 | 59.0 |
| CDX79815 | Canola | extracellular | 68.18 | 58.82 |
| CDY58530 | Canola | extracellular | 68.18 | 58.82 |
| CDY30416 | Canola | extracellular | 65.91 | 57.43 |
| CDX79816 | Canola | extracellular | 62.5 | 55.56 |
| CDY30414 | Canola | extracellular | 60.23 | 55.21 |
| CDY58533 | Canola | extracellular | 53.41 | 54.65 |
| CDY23377 | Canola | extracellular | 61.36 | 53.47 |
| CDY23378 | Canola | plasma membrane | 51.14 | 50.56 |
| CDY30418 | Canola | extracellular | 50.0 | 49.44 |
| CDY23371 | Canola | extracellular | 48.86 | 45.26 |
| CDY30411 | Canola | extracellular | 47.73 | 44.21 |
| CDY30412 | Canola | extracellular | 46.59 | 42.27 |
| CDY44233 | Canola | extracellular | 13.64 | 12.9 |
Protein Annotations
| Gene3D:3.30.30.10 | MapMan:35.1 | GO:A0A078FTS2 | UniProt:A0A078FTS2 | EnsemblPlants:CDY17920 | ProteinID:CDY17920 |
| ProteinID:CDY17920.1 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008200 | GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00002269001 | InterPro:IPR036574 | PFAM:PF00537 |
| SMART:SM00505 | SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | InterPro:Scorpion_toxinL/defensin | SignalP:SignalP-noTM |
| UniParc:UPI0004EE0B12 | SEG:seg | : | : | : | : |
Description
BnaC04g02990DBnaC04g02990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTS2]
Coordinates
chrLK032079:-:567015..567640
Molecular Weight (calculated)
9917.0 Da
IEP (calculated)
7.602
GRAVY (calculated)
0.050
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MAIKPLSIFV VFFIFFLVIS DMPEIEAQDS KCLREYGGDV GFGFCAPRIF PTICYTRCRE NKGAKGGRCR WGQGTNVTCL CDYCNDQP
1: MAKAIVSIFV VFFIFFLVIS DVPEIEAQGN ECLKEYGGDV GFGFCAPRIF PTICYTRCRE NKGAKGGRCR WGQGSNVKCL CDFCDDTPQ
Arabidopsis Description
ATTI1TI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRC4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.