Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30414 | Canola | extracellular | 81.63 | 83.33 |
| CDX83478 | Canola | extracellular | 65.31 | 71.91 |
| CDY58533 | Canola | extracellular | 61.22 | 69.77 |
| CDX79816 | Canola | extracellular | 70.41 | 69.7 |
| CDY44232 | Canola | extracellular | 56.12 | 67.9 |
| CDY30416 | Canola | extracellular | 69.39 | 67.33 |
| CDX79817 | Canola | extracellular | 60.2 | 67.05 |
| CDY17920 | Canola | extracellular | 59.18 | 65.91 |
| CDY58530 | Canola | extracellular | 68.37 | 65.69 |
| CDX79815 | Canola | extracellular | 68.37 | 65.69 |
| CDX83479 | Canola | extracellular | 62.24 | 65.59 |
| CDY30415 | Canola | extracellular | 66.33 | 65.0 |
| CDY23377 | Canola | extracellular | 66.33 | 64.36 |
| CDY23371 | Canola | extracellular | 43.88 | 45.26 |
| CDY30411 | Canola | extracellular | 43.88 | 45.26 |
| CDY23378 | Canola | plasma membrane | 40.82 | 44.94 |
| CDY30418 | Canola | extracellular | 40.82 | 44.94 |
| CDY58529 | Canola | extracellular, nucleus, plasma membrane | 57.14 | 44.44 |
| CDY30412 | Canola | extracellular | 43.88 | 44.33 |
| CDY44233 | Canola | extracellular | 13.27 | 13.98 |
Protein Annotations
| Gene3D:3.30.30.10 | MapMan:35.1 | GO:A0A078GDC1 | UniProt:A0A078GDC1 | EnsemblPlants:CDY23374 | ProteinID:CDY23374 |
| ProteinID:CDY23374.1 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008200 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0031640 | GO:GO:0050832 |
| GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00021975001 | InterPro:IPR036574 | PFAM:PF00537 | SMART:SM00505 | SUPFAM:SSF57095 |
| InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | InterPro:Scorpion_toxinL/defensin | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EDCB72 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g49020DBnaC04g49020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDC1]
Coordinates
chrLK032143:+:192788..193532
Molecular Weight (calculated)
10681.0 Da
IEP (calculated)
5.786
GRAVY (calculated)
0.248
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MDMATKSVSS LAAFFILFLV IFAEMPEIEA QDSECLKEYG GDVGFGFCAP RIYPSFCVQR CRADKGALSG KCIWGQGGNV KCLCNFCRHE PGQILSGI
1: MATKSVSTFA IFFILVLAIF AETPEIEAYD RKCLKEYGGD VGFSYCAPRI FPTFCDQNCR KNKGAKGGVC RWEENNAIGV KCLCNFCSEE PSDQTLSRI
Arabidopsis Description
Scorpion toxin-like knottin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HTA0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.