Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79817 | Canola | extracellular | 62.7 | 89.77 |
| CDY17920 | Canola | extracellular | 61.9 | 88.64 |
| AT2G43510.1 | Thale cress | extracellular | 55.56 | 78.65 |
| CDX83478 | Canola | extracellular | 45.24 | 64.04 |
| CDY44232 | Canola | extracellular | 39.68 | 61.73 |
| CDX83479 | Canola | extracellular | 45.24 | 61.29 |
| CDY30416 | Canola | extracellular | 48.41 | 60.4 |
| CDY30415 | Canola | extracellular | 47.62 | 60.0 |
| CDX79816 | Canola | extracellular | 45.24 | 57.58 |
| CDY23374 | Canola | extracellular | 44.44 | 57.14 |
| CDX79815 | Canola | extracellular | 46.03 | 56.86 |
| CDY58530 | Canola | extracellular | 46.03 | 56.86 |
| CDY58533 | Canola | extracellular | 38.1 | 55.81 |
| CDY23377 | Canola | extracellular | 44.44 | 55.45 |
| CDY30414 | Canola | extracellular | 42.06 | 55.21 |
| CDY23371 | Canola | extracellular | 35.71 | 47.37 |
| CDY23378 | Canola | plasma membrane | 33.33 | 47.19 |
| CDY30411 | Canola | extracellular | 34.92 | 46.32 |
| CDY30418 | Canola | extracellular | 32.54 | 46.07 |
| CDY30412 | Canola | extracellular | 33.33 | 43.3 |
| CDY44233 | Canola | extracellular | 9.52 | 12.9 |
Protein Annotations
| Gene3D:3.30.30.10 | MapMan:35.1 | GO:A0A078J0B3 | UniProt:A0A078J0B3 | EnsemblPlants:CDY58529 | ProteinID:CDY58529 |
| ProteinID:CDY58529.1 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008200 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00024817001 |
| InterPro:IPR036574 | PFAM:PF00537 | SMART:SM00505 | SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf |
| InterPro:Scorpion_toxinL/defensin | TMHMM:TMhelix | UniParc:UPI0004EF05A4 | SEG:seg | : | : |
Description
BnaC04g52990DBnaC04g52990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0B3]
Coordinates
chrLK033677:+:4306..5754
Molecular Weight (calculated)
14175.2 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.120
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSIRCIDN IIEPNQSISC SIVQPHQNKP KVRHIAKVTM ALKPLSIFVV FFIFLVISDV PEIEAQDSQC LREYGGDVGF SFCAPRILPT FCYTRCRENK
101: GAKGGRCRWG PGTNVRCLCD YCNDKP
101: GAKGGRCRWG PGTNVRCLCD YCNDKP
1: MAKAIVSIFV VFFIFFLVIS DVPEIEAQGN ECLKEYGGDV GFGFCAPRIF PTICYTRCRE NKGAKGGRCR WGQGSNVKCL CDFCDDTPQ
Arabidopsis Description
ATTI1TI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRC4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.