Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
26746009
|
msms PMID:
26746009
doi
National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037702.1-P | Field mustard | extracellular | 97.75 | 97.75 |
| CDY30418 | Canola | extracellular | 97.75 | 97.75 |
| AT2G43550.1 | Thale cress | extracellular | 77.53 | 77.53 |
| CDX79817 | Canola | extracellular | 50.56 | 51.14 |
| CDY17920 | Canola | extracellular | 50.56 | 51.14 |
| CDX83479 | Canola | extracellular | 48.31 | 46.24 |
| CDX83478 | Canola | extracellular | 44.94 | 44.94 |
| CDX79816 | Canola | extracellular | 48.31 | 43.43 |
| CDY44232 | Canola | extracellular | 39.33 | 43.21 |
| CDY30414 | Canola | extracellular | 46.07 | 42.71 |
| CDX79815 | Canola | extracellular | 47.19 | 41.18 |
| CDY58530 | Canola | extracellular | 47.19 | 41.18 |
| CDY23374 | Canola | extracellular | 44.94 | 40.82 |
| CDY30415 | Canola | extracellular | 43.82 | 39.0 |
| CDY30416 | Canola | extracellular | 43.82 | 38.61 |
| CDY58533 | Canola | extracellular | 37.08 | 38.37 |
| CDY23377 | Canola | extracellular | 42.7 | 37.62 |
| CDY58529 | Canola | extracellular, nucleus, plasma membrane | 47.19 | 33.33 |
| CDY30412 | Canola | extracellular | 35.96 | 32.99 |
| CDY23371 | Canola | extracellular | 34.83 | 32.63 |
| CDY30411 | Canola | extracellular | 33.71 | 31.58 |
| CDY44233 | Canola | extracellular | 10.11 | 9.68 |
Protein Annotations
| Gene3D:3.30.30.10 | MapMan:35.1 | GO:A0A078GFI3 | UniProt:A0A078GFI3 | EnsemblPlants:CDY23378 | ProteinID:CDY23378 |
| ProteinID:CDY23378.1 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008200 | GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00021980001 | InterPro:IPR036574 | PFAM:PF00537 |
| SMART:SM00505 | SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | InterPro:Scorpion_toxinL/defensin | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EF4AEB | SEG:seg | : | : | : |
Description
BnaC04g49060DBnaC04g49060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFI3]
Coordinates
chrLK032143:+:210080..211915
Molecular Weight (calculated)
10078.3 Da
IEP (calculated)
8.577
GRAVY (calculated)
-0.276
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MKSVYIFVAL FIFFLAVLGE SPEKIGADEK FKCLEEYGGD VGPTFCNPKF FPTLCRQNCR SFKGAKGGKC EKKHKSKPIK CFCDYCKDD
1: MKFVSVFLVL FIFFLVVLEA PEKIEAKDDK FICVVEYGGD VGPTFCNPKF FPTLCRQNCR SFKGAKGGKC VKQPKHKHIK CFCDYCKDD
Arabidopsis Description
ATTI6Defensin-like protein 197 [Source:UniProtKB/Swiss-Prot;Acc:O22869]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.