Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037706.1-P | Field mustard | extracellular | 96.0 | 98.97 |
| CDY30414 | Canola | extracellular | 67.0 | 69.79 |
| CDX83478 | Canola | extracellular | 62.0 | 69.66 |
| CDX83479 | Canola | extracellular | 64.0 | 68.82 |
| CDX79817 | Canola | extracellular | 60.0 | 68.18 |
| CDY17920 | Canola | extracellular | 59.0 | 67.05 |
| CDX79815 | Canola | extracellular | 68.0 | 66.67 |
| CDX79816 | Canola | extracellular | 66.0 | 66.67 |
| CDY58530 | Canola | extracellular | 68.0 | 66.67 |
| CDY44232 | Canola | extracellular | 54.0 | 66.67 |
| CDY23374 | Canola | extracellular | 65.0 | 66.33 |
| CDY30416 | Canola | extracellular | 66.0 | 65.35 |
| CDY58533 | Canola | extracellular | 56.0 | 65.12 |
| CDY23377 | Canola | extracellular | 65.0 | 64.36 |
| CDY23371 | Canola | extracellular | 47.0 | 49.47 |
| CDY30411 | Canola | extracellular | 46.0 | 48.42 |
| CDY58529 | Canola | extracellular, nucleus, plasma membrane | 60.0 | 47.62 |
| CDY30412 | Canola | extracellular | 43.0 | 44.33 |
| CDY30418 | Canola | extracellular | 39.0 | 43.82 |
| CDY23378 | Canola | plasma membrane | 39.0 | 43.82 |
| CDY44233 | Canola | extracellular | 13.0 | 13.98 |
Protein Annotations
| EnsemblPlants:CDY30415 | EnsemblPlantsGene:GSBRNA2T00045114001 | Gene3D:3.30.30.10 | GO:A0A078GV61 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0008150 | GO:GO:0008200 | GO:GO:0065009 | InterPro:IPR036574 | InterPro:Scorpion_toxin-like_sf |
| InterPro:Scorpion_toxinL/defensin | PFAM:PF00537 | ProteinID:CDY30415 | ProteinID:CDY30415.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF57095 | TMHMM:TMhelix | UniParc:UPI0004EDB620 | UniProt:A0A078GV61 | MapMan:35.1 | : |
Description
BnaA04g25160DBnaA04g25160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV61]
Coordinates
chrLK032253:+:205296..205991
Molecular Weight (calculated)
11385.7 Da
IEP (calculated)
4.644
GRAVY (calculated)
-0.034
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MAMTTKPISS FAVFFIFFLV IFAEMPETEA QDRECLKEYG GEVGFSYCAP LIRPTFCFRR CREDKGAKGG ECRWGDEFNV KCLCDFCSDK AYDQILSTGI
1: MATKSVSTFA IFFILVLAIF AETPEIEAYD RKCLKEYGGD VGFSYCAPRI FPTFCDQNCR KNKGAKGGVC RWEENNAIGV KCLCNFCSEE PSDQTLSRI
Arabidopsis Description
Scorpion toxin-like knottin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HTA0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.