Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30411 | Canola | extracellular | 96.84 | 96.84 |
| CDY30412 | Canola | extracellular | 56.84 | 55.67 |
| CDX83478 | Canola | extracellular | 47.37 | 50.56 |
| CDX79817 | Canola | extracellular | 45.26 | 48.86 |
| CDY17920 | Canola | extracellular | 45.26 | 48.86 |
| CDY30416 | Canola | extracellular | 51.58 | 48.51 |
| CDX83479 | Canola | extracellular | 47.37 | 48.39 |
| CDY30415 | Canola | extracellular | 49.47 | 47.0 |
| AT2G43530.1 | Thale cress | extracellular | 41.05 | 46.99 |
| CDY44232 | Canola | extracellular | 38.95 | 45.68 |
| CDY23377 | Canola | extracellular | 48.42 | 45.54 |
| CDY23374 | Canola | extracellular | 45.26 | 43.88 |
| CDY30414 | Canola | extracellular | 44.21 | 43.75 |
| CDX79816 | Canola | extracellular | 45.26 | 43.43 |
| CDY58533 | Canola | extracellular | 38.95 | 43.02 |
| CDY58530 | Canola | extracellular | 45.26 | 42.16 |
| CDX79815 | Canola | extracellular | 45.26 | 42.16 |
| CDY58529 | Canola | extracellular, nucleus, plasma membrane | 47.37 | 35.71 |
| CDY30418 | Canola | extracellular | 32.63 | 34.83 |
| CDY23378 | Canola | plasma membrane | 32.63 | 34.83 |
| CDY44233 | Canola | extracellular | 13.68 | 13.98 |
Protein Annotations
| EnsemblPlants:CDY23371 | EnsemblPlantsGene:GSBRNA2T00021972001 | Gene3D:3.30.30.10 | GO:A0A078GDA3 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0008150 | GO:GO:0008200 | GO:GO:0065009 | InterPro:IPR036574 | InterPro:Scorpion_toxin-like_sf |
| InterPro:Scorpion_toxinL/defensin | PFAM:PF00537 | ProteinID:CDY23371 | ProteinID:CDY23371.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF57095 | TMHMM:TMhelix | UniParc:UPI0004EB795C | UniProt:A0A078GDA3 | MapMan:35.2 | : |
Description
BnaC04g48990DBnaC04g48990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDA3]
Coordinates
chrLK032143:+:185133..185780
Molecular Weight (calculated)
10863.1 Da
IEP (calculated)
4.221
GRAVY (calculated)
0.194
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MDTKSLSFFA VFFILFLVIF EVPEIEAQLC MREYVGEFPL SNCSVLEIQL CHTKCRENNG AKGGICYVAG EGEDEQRTES FKCLCNFCSE YFCQI
1: MATKSVSTFA IFFILVLAIF ETPEIEAYDR KCLKEYGGDV GFSYCAPRIF PTFCDQNCRK NKGAKGGVCR WEENNAIGVK CLCNFCSEEP SDQTLSRI
Arabidopsis Description
Scorpion toxin-like knottin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HTA0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.