Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 8
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036498.1-P | Field mustard | plasma membrane | 100.0 | 100.0 |
| CDY05788 | Canola | plasma membrane | 91.12 | 91.12 |
| AT2G20740.1 | Thale cress | plasma membrane | 78.97 | 76.47 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 57.48 | 58.02 |
| KRH25560 | Soybean | plasma membrane | 54.67 | 55.71 |
| KRH55976 | Soybean | plasma membrane | 54.21 | 54.98 |
| Solyc07g054160.2.1 | Tomato | plasma membrane | 56.54 | 54.5 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 56.54 | 54.5 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 49.53 | 51.46 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 46.26 | 49.5 |
| GSMUA_Achr10P... | Banana | plasma membrane | 42.99 | 47.92 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 47.2 | 46.98 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 46.73 | 46.51 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 46.26 | 45.21 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 45.79 | 45.16 |
| Zm00001d001811_P001 | Maize | plasma membrane | 43.93 | 43.52 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 35.98 | 43.26 |
| Zm00001d026634_P002 | Maize | mitochondrion | 41.59 | 40.45 |
| GSMUA_Achr11P... | Banana | plasma membrane | 46.26 | 29.64 |
| CDY31986 | Canola | plasma membrane | 32.24 | 25.84 |
| CDY35218 | Canola | plasma membrane | 32.71 | 25.64 |
| CDY06872 | Canola | plasma membrane | 32.24 | 25.27 |
| CDY65849 | Canola | plasma membrane | 31.31 | 24.91 |
| CDY01278 | Canola | plasma membrane | 29.44 | 22.42 |
| CDX93836 | Canola | plasma membrane | 29.44 | 22.42 |
| CDY48874 | Canola | plasma membrane | 30.37 | 18.9 |
| CDY32286 | Canola | plasma membrane | 30.37 | 17.57 |
Protein Annotations
| EnsemblPlants:CDY31941 | EnsemblPlantsGene:GSBRNA2T00050721001 | GO:A0A078H2B4 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR19282 | PANTHER:PTHR19282:SF158 | ProteinID:CDY31941 | ProteinID:CDY31941.1 | TMHMM:TMhelix | UniParc:UPI0002540E52 |
| UniProt:A0A078H2B4 | MapMan:35.1 | : | : | : | : |
Description
BnaA07g00540DBnaA07g00540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2B4]
Coordinates
chrLK032283:-:51071..52700
Molecular Weight (calculated)
24050.5 Da
IEP (calculated)
7.388
GRAVY (calculated)
0.332
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRMVRSCLQ SMLKLVNSLL GMVGVAVILY AVWLIRQWQQ QTGSLPFSHP LPWFISAFLC LGALLCLVTC AGHIAAETVN GCCLYFYMGF IVLLIMVEGG
101: VIADTFLNPD WKQDFPEDPT GAFYRFSKFV ESNYKICRWI GLSIVSVQGA SVLLAMLLKA LGPHRHYDSD DEYDVSTVAL LRDARQPHPY VVGEPIYGPK
201: PDSWTVRINE RANR
101: VIADTFLNPD WKQDFPEDPT GAFYRFSKFV ESNYKICRWI GLSIVSVQGA SVLLAMLLKA LGPHRHYDSD DEYDVSTVAL LRDARQPHPY VVGEPIYGPK
201: PDSWTVRINE RANR
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.