CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 6
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH22653
KRH26664
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20740.1	KRG97393	AT1G27300.1	21798944
AT2G20740.1	KRH31520	AT1G27300.1	21798944
AT2G20740.1	KRH76090	AT1G27300.1	21798944
AT2G20740.1	KRH11076	AT4G19030.1	21798944
AT2G20740.1	KRH21197	AT4G19030.1	21798944
AT2G20740.1	KRH42923	AT4G19030.1	21798944
AT2G20740.1	KRH42926	AT4G19030.1	21798944
AT2G20740.1	KRH45251	AT4G19030.1	21798944
AT2G20740.1	KRH59035	AT4G19030.1	21798944
AT2G20740.1	KRH59036	AT4G19030.1	21798944
AT2G20740.1	KRH22653	AT5G22290.1	21798944
AT2G20740.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25560	Soybean	plasma membrane	91.0	91.43
VIT_12s0059g00180.t01	Wine grape	golgi, mitochondrion, plasma membrane	61.14	60.85
PGSC0003DMT400047175	Potato	plasma membrane	60.66	57.66
AT2G20740.1	Thale cress	plasma membrane	60.19	57.47
GSMUA_Achr1P02970_001	Banana	plasma membrane	54.03	57.0
Solyc07g054160.2.1	Tomato	plasma membrane	59.24	56.31
CDY05788	Canola	plasma membrane	55.45	54.67
Bra036498.1-P	Field mustard	plasma membrane	54.98	54.21
CDY31941	Canola	plasma membrane	54.98	54.21
GSMUA_Achr10P...	Banana	plasma membrane	49.29	54.17
GSMUA_Achr5P10780_001	Banana	extracellular, plasma membrane	51.18	52.43
Os04t0679900-01	Rice	mitochondrion, plasma membrane	51.66	50.23
Zm00001d001811_P001	Maize	plasma membrane	49.76	48.61
TraesCS2B01G596400.1	Wheat	mitochondrion, plasma membrane	48.82	47.91
EES13114	Sorghum	mitochondrion, plasma membrane	49.29	47.49
TraesCS2A01G587000.1	Wheat	plasma membrane	48.34	47.44
HORVU2Hr1G118680.7	Barley	endoplasmic reticulum	38.39	45.51
Zm00001d026634_P002	Maize	mitochondrion	45.02	43.18
GSMUA_Achr11P...	Banana	plasma membrane	51.18	32.34
KRH19680	Soybean	plasma membrane	34.6	29.8
KRH32282	Soybean	plasma membrane	34.12	29.51
KRH04302	Soybean	endoplasmic reticulum	36.02	27.44
KRH57584	Soybean	plasma membrane	30.33	26.45
KRH77234	Soybean	golgi, plasma membrane, vacuole	34.12	25.44
KRH28260	Soybean	golgi, plasma membrane, vacuole	32.7	24.38

Protein Annotations

EMBL:ACUP02004075	EnsemblPlants:KRH55976	EnsemblPlantsGene:GLYMA_06G293700	EntrezGene:100527459	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Tetraspanin/Peripherin	PANTHER:PTHR19282	PANTHER:PTHR19282:SF158	PFAM:PF00335	ProteinID:KRH55975.1
ProteinID:KRH55976	ProteinID:KRH55976.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00023C8014	UniProt:I1KF24
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:48252826..48257117

Molecular Weight (calculated)

23967.4 Da

IEP (calculated)

6.338

GRAVY (calculated)

0.271

Length

211 amino acids

Sequence
(BLAST)

001: MVRVLRSCIQ SILKLVNSVI GMAGLAMILY SAWMIRVWQR KMGELPFGHD SDYPPPWFIY MFLGLGVAFC VITCLGHVAA ETANGCCLYL YMVFVVLLIM
101: LEAAVTVDVF VNQDWEKDFP KDPSGSFDQF KNFIRSNYEM CKWVGLSLVS VQGLSLLLAM ILKALGPHQY YDSDDEYAPD RVPLLRNAPP HYVVVDPGYV
201: HGNDAWRRQD K

Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)

001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R

Arabidopsis Description

TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.