CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 6
mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH22653
KRH26664
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20740.1	KRG97393	AT1G27300.1	21798944
AT2G20740.1	KRH31520	AT1G27300.1	21798944
AT2G20740.1	KRH76090	AT1G27300.1	21798944
AT2G20740.1	KRH11076	AT4G19030.1	21798944
AT2G20740.1	KRH21197	AT4G19030.1	21798944
AT2G20740.1	KRH42923	AT4G19030.1	21798944
AT2G20740.1	KRH42926	AT4G19030.1	21798944
AT2G20740.1	KRH45251	AT4G19030.1	21798944
AT2G20740.1	KRH59035	AT4G19030.1	21798944
AT2G20740.1	KRH59036	AT4G19030.1	21798944
AT2G20740.1	KRH22653	AT5G22290.1	21798944
AT2G20740.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55976	Soybean	plasma membrane	91.43	91.0
VIT_12s0059g00180.t01	Wine grape	golgi, mitochondrion, plasma membrane	60.48	59.91
AT2G20740.1	Thale cress	plasma membrane	60.95	57.92
PGSC0003DMT400047175	Potato	plasma membrane	60.95	57.66
Solyc07g054160.2.1	Tomato	plasma membrane	59.52	56.31
CDY05788	Canola	plasma membrane	56.67	55.61
GSMUA_Achr1P02970_001	Banana	plasma membrane	52.38	55.0
Bra036498.1-P	Field mustard	plasma membrane	55.71	54.67
CDY31941	Canola	plasma membrane	55.71	54.67
GSMUA_Achr10P...	Banana	plasma membrane	49.05	53.65
GSMUA_Achr5P10780_001	Banana	extracellular, plasma membrane	52.38	53.4
Os04t0679900-01	Rice	mitochondrion, plasma membrane	51.43	49.77
Zm00001d001811_P001	Maize	plasma membrane	49.05	47.69
TraesCS2B01G596400.1	Wheat	mitochondrion, plasma membrane	48.57	47.44
TraesCS2A01G587000.1	Wheat	plasma membrane	48.1	46.98
EES13114	Sorghum	mitochondrion, plasma membrane	48.57	46.58
HORVU2Hr1G118680.7	Barley	endoplasmic reticulum	39.05	46.07
Zm00001d026634_P002	Maize	mitochondrion	45.24	43.18
GSMUA_Achr11P...	Banana	plasma membrane	50.48	31.74
KRH32282	Soybean	plasma membrane	35.71	30.74
KRH19680	Soybean	plasma membrane	35.71	30.61
KRH04302	Soybean	endoplasmic reticulum	35.71	27.08
KRH57584	Soybean	plasma membrane	30.0	26.03
KRH77234	Soybean	golgi, plasma membrane, vacuole	33.33	24.73
KRH28260	Soybean	golgi, plasma membrane, vacuole	31.9	23.67

Protein Annotations

EMBL:ACUP02007284	EnsemblPlants:KRH25560	EnsemblPlantsGene:GLYMA_12G111700	EntrezGene:100806660	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Tetraspanin/Peripherin	PANTHER:PTHR19282	PANTHER:PTHR19282:SF158	PFAM:PF00335	ProteinID:KRH25560
ProteinID:KRH25560.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233C72C	UniProt:I1LS12	MapMan:35.1

Description

hypothetical protein

Coordinates

chr12:-:10825973..10830699

Molecular Weight (calculated)

23796.0 Da

IEP (calculated)

6.338

GRAVY (calculated)

0.207

Length

210 amino acids

Sequence
(BLAST)

001: MVRVLRSCIQ STLKLVNSVI GMAGLAMILY SAWMIRVWQR KMGELPFGHD SDYPPPWFIY TFLGLGVAFC VITCLGHVAA ETANGCCLYL YIVFVVLLIM
101: LEAAVTVDVF VNQDWEKDFP KDPSGSFDQF KNFIRSNYEM CKWVGLSLVS VQGLSLLLAM ILKALGPHQY YDSDDEYAPD RVPLLKNAPP HYVVDPGYAH
201: GNDTWRRQEK

Best Arabidopsis Sequence Match ( AT2G20740.1 )
(BLAST)

001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R

Arabidopsis Description

TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.