Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036498.1-P | Field mustard | plasma membrane | 76.47 | 78.97 |
| CDY31941 | Canola | plasma membrane | 76.47 | 78.97 |
| CDY05788 | Canola | plasma membrane | 71.49 | 73.83 |
| KRH25560 | Soybean | plasma membrane | 57.92 | 60.95 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 57.92 | 60.38 |
| KRH55976 | Soybean | plasma membrane | 57.47 | 60.19 |
| Solyc07g054160.2.1 | Tomato | plasma membrane | 57.01 | 56.76 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 57.01 | 56.76 |
| GSMUA_Achr10P... | Banana | plasma membrane | 43.89 | 50.52 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 45.25 | 50.0 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 45.25 | 48.54 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 43.89 | 45.12 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 43.44 | 44.65 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 43.44 | 44.24 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 42.08 | 42.47 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 33.94 | 42.13 |
| Zm00001d001811_P001 | Maize | plasma membrane | 41.18 | 42.13 |
| Zm00001d026634_P002 | Maize | mitochondrion | 39.37 | 39.55 |
| GSMUA_Achr11P... | Banana | plasma membrane | 43.89 | 29.04 |
| AT2G20230.1 | Thale cress | plasma membrane | 33.94 | 27.78 |
| AT1G32400.3 | Thale cress | plasma membrane | 29.86 | 23.57 |
| AT4G28770.2 | Thale cress | plasma membrane | 31.67 | 21.54 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816603 | ProteinID:AAD20921.1 | ProteinID:AEC07063.1 | ProteinID:AEC07064.1 | ProteinID:AEC07065.1 |
| EMBL:AF462842 | EMBL:AK175553 | EMBL:AK176086 | ArrayExpress:AT2G20740 | EnsemblPlantsGene:AT2G20740 | RefSeq:AT2G20740 |
| TAIR:AT2G20740 | RefSeq:AT2G20740-TAIR-G | EnsemblPlants:AT2G20740.1 | TAIR:AT2G20740.1 | EMBL:AY054217 | EMBL:AY097350 |
| Unigene:At.23632 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_179667.2 | RefSeq:NP_973493.1 |
| RefSeq:NP_973494.1 | PFAM:PF00335 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR19282 |
| PANTHER:PTHR19282:SF158 | UniProt:Q940P5 | TMHMM:TMhelix | InterPro:Tetraspanin/Peripherin | UniParc:UPI00000AB7BD | : |
Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
Coordinates
chr2:+:8935537..8937554
Molecular Weight (calculated)
24657.5 Da
IEP (calculated)
7.070
GRAVY (calculated)
0.345
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.