Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G084420.1 | |
| HORVU7Hr1G088900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20740.1 | HORVU2Hr1G084420.1 | AT1G27300.1 | 21798944 |
| AT2G20740.1 | HORVU7Hr1G088900.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 91.57 | 75.81 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 91.01 | 75.35 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 65.73 | 53.92 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 62.92 | 51.14 |
| GSMUA_Achr10P... | Banana | plasma membrane | 53.93 | 50.0 |
| Zm00001d001811_P001 | Maize | plasma membrane | 59.55 | 49.07 |
| Zm00001d026634_P002 | Maize | mitochondrion | 58.43 | 47.27 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 51.12 | 44.17 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 48.31 | 43.0 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 50.56 | 42.45 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 51.12 | 40.99 |
| Solyc07g054160.2.1 | Tomato | plasma membrane | 50.56 | 40.54 |
| KRH25560 | Soybean | plasma membrane | 46.07 | 39.05 |
| KRH55976 | Soybean | plasma membrane | 45.51 | 38.39 |
| VIT_00s0583g00020.t01 | Wine grape | plasma membrane | 43.82 | 36.97 |
| CDY31941 | Canola | plasma membrane | 43.26 | 35.98 |
| CDY05788 | Canola | plasma membrane | 43.26 | 35.98 |
| Bra036498.1-P | Field mustard | plasma membrane | 43.26 | 35.98 |
| AT2G20740.1 | Thale cress | plasma membrane | 42.13 | 33.94 |
| Solyc02g078450.2.1 | Tomato | plasma membrane | 41.01 | 33.8 |
| PGSC0003DMT400057803 | Potato | plasma membrane | 40.45 | 33.33 |
| GSMUA_Achr11P... | Banana | plasma membrane | 57.3 | 30.54 |
| HORVU7Hr1G105880.1 | Barley | plastid | 30.9 | 18.33 |
| HORVU7Hr1G070700.3 | Barley | vacuole | 26.97 | 17.84 |
| HORVU1Hr1G034980.1 | Barley | plasma membrane | 27.53 | 17.19 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G118680.7 | EnsemblPlantsGene:HORVU2Hr1G118680 | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF158 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:743141593..743144509
Molecular Weight (calculated)
19701.5 Da
IEP (calculated)
4.493
GRAVY (calculated)
0.170
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: XAWSQQAAGH LPAPWFIYTL LSLGIIMCLL TCSGHIAAET ANSPCLSCHM IFVFLLVILE AAIAADVFLN SYWEEDFPDD PSGKFDEFKH FVRSNFDVCE
101: WVALSVVAAQ VLSIILAMVL RALGPDSEIE YDSDDDAVPA RLPLLRSHAQ NSPNYGQPNS PRRIDSWHVR ILDKANQQ
101: WVALSVVAAQ VLSIILAMVL RALGPDSEIE YDSDDDAVPA RLPLLRSHAQ NSPNYGQPNS PRRIDSWHVR ILDKANQQ
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.