Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_06s0080g00970.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20740.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT2G20740.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT2G20740.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55976 | Soybean | plasma membrane | 60.85 | 61.14 |
| KRH25560 | Soybean | plasma membrane | 59.91 | 60.48 |
| Solyc07g054160.2.1 | Tomato | plasma membrane | 62.74 | 59.91 |
| PGSC0003DMT400047175 | Potato | plasma membrane | 62.26 | 59.46 |
| AT2G20740.1 | Thale cress | plasma membrane | 60.38 | 57.92 |
| GSMUA_Achr10P... | Banana | plasma membrane | 52.36 | 57.81 |
| Bra036498.1-P | Field mustard | plasma membrane | 58.02 | 57.48 |
| CDY31941 | Canola | plasma membrane | 58.02 | 57.48 |
| GSMUA_Achr1P02970_001 | Banana | plasma membrane | 53.3 | 56.5 |
| GSMUA_Achr5P10780_001 | Banana | extracellular, plasma membrane | 53.77 | 55.34 |
| CDY05788 | Canola | plasma membrane | 55.66 | 55.14 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 52.83 | 51.61 |
| TraesCS2A01G587000.1 | Wheat | plasma membrane | 51.89 | 51.16 |
| TraesCS2B01G596400.1 | Wheat | mitochondrion, plasma membrane | 51.42 | 50.7 |
| EES13114 | Sorghum | mitochondrion, plasma membrane | 52.36 | 50.68 |
| HORVU2Hr1G118680.7 | Barley | endoplasmic reticulum | 42.45 | 50.56 |
| Zm00001d001811_P001 | Maize | plasma membrane | 50.47 | 49.54 |
| VIT_00s0583g00020.t01 | Wine grape | plasma membrane | 46.7 | 46.92 |
| Zm00001d026634_P002 | Maize | mitochondrion | 47.17 | 45.45 |
| GSMUA_Achr11P... | Banana | plasma membrane | 53.77 | 34.13 |
| VIT_07s0005g04950.t01 | Wine grape | plasma membrane | 36.79 | 28.47 |
| VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 32.08 | 24.29 |
Protein Annotations
| EntrezGene:100261981 | wikigene:100261981 | MapMan:35.1 | ProteinID:CBI28766 | ProteinID:CBI28766.3 | UniProt:D7TE43 |
| EMBL:FN595765 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100261981 | wikigene:LOC100261981 |
| PFAM:PF00335 | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF158 | TIGR:TC54439 | TMHMM:TMhelix | InterPro:Tetraspanin/Peripherin |
| UniParc:UPI000198441D | ArrayExpress:VIT_12s0059g00180 | EnsemblPlantsGene:VIT_12s0059g00180 | EnsemblPlants:VIT_12s0059g00180.t01 | unigene:Vvi.5872 | RefSeq:XP_002263228 |
| RefSeq:XP_002263228.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:5079383..5084179
Molecular Weight (calculated)
24144.3 Da
IEP (calculated)
6.227
GRAVY (calculated)
0.186
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRIFRSCMQ SILKLVNSII GMVGIAMVMY ALWMIRVWNR HMDDYDSRAP WFIYTFLGLG ATLCLFTCFG HAAAETANGC CLYVYMMYIF FLLILEAGVT
101: ADVFLNHDWE EDFPEDPTGS FHEFKNFVRS NFEICKWIGL SILFVQGLSI LLAMVLKALG PHQYYDSDDE YAPTRAPLLR NAVHPPPYVA GDPFSGSRTD
201: AYGKRINEKT GR
101: ADVFLNHDWE EDFPEDPTGS FHEFKNFVRS NFEICKWIGL SILFVQGLSI LLAMVLKALG PHQYYDSDDE YAPTRAPLLR NAVHPPPYVA GDPFSGSRTD
201: AYGKRINEKT GR
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
Arabidopsis Description
TOM2AH3Tetraspanin-19 [Source:UniProtKB/Swiss-Prot;Acc:Q940P5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.