Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 8
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77234 | Soybean | golgi, plasma membrane, vacuole | 72.86 | 72.08 |
| KRH28260 | Soybean | golgi, plasma membrane, vacuole | 70.71 | 69.96 |
| KRH57584 | Soybean | plasma membrane | 58.57 | 67.77 |
| KRH04302 | Soybean | endoplasmic reticulum | 65.36 | 66.06 |
| Solyc08g077220.2.1 | Tomato | golgi, plasma membrane, vacuole | 66.07 | 65.14 |
| AT1G32400.3 | Thale cress | plasma membrane | 63.93 | 63.93 |
| Bra010162.1-P | Field mustard | plasma membrane | 63.57 | 63.8 |
| Bra023264.1-P | Field mustard | plasma membrane | 62.5 | 62.28 |
| CDX93836 | Canola | plasma membrane | 62.5 | 62.28 |
| CDY01278 | Canola | plasma membrane | 61.07 | 60.85 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 56.07 | 55.48 |
| PGSC0003DMT400062233 | Potato | plasma membrane | 65.71 | 55.42 |
| GSMUA_Achr4P20930_001 | Banana | golgi, plasma membrane, vacuole | 55.71 | 55.12 |
| GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 53.93 | 53.17 |
| KXG38876 | Sorghum | plasma membrane | 52.5 | 52.69 |
| Zm00001d030014_P011 | Maize | plasma membrane | 52.14 | 52.33 |
| GSMUA_Achr1P00640_001 | Banana | plasma membrane | 51.07 | 52.0 |
| CDY48874 | Canola | plasma membrane | 63.57 | 51.74 |
| Os08t0282000-01 | Rice | plasma membrane | 52.14 | 51.41 |
| HORVU1Hr1G034980.1 | Barley | plasma membrane | 51.79 | 50.88 |
| TraesCS1D01G133700.1 | Wheat | plasma membrane | 51.79 | 50.88 |
| TraesCS1A01G137700.2 | Wheat | plasma membrane | 51.43 | 50.53 |
| TraesCS1B01G148900.1 | Wheat | golgi, plasma membrane, vacuole | 50.71 | 49.82 |
| EES13397 | Sorghum | plasma membrane | 48.57 | 49.63 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 22.5 | 49.61 |
| TraesCS7A01G299900.1 | Wheat | plasma membrane | 47.5 | 49.44 |
| TraesCS7B01G187200.1 | Wheat | plasma membrane | 47.5 | 49.44 |
| TraesCS7D01G294800.2 | Wheat | plasma membrane | 47.5 | 49.44 |
| HORVU7Hr1G070700.3 | Barley | vacuole | 46.79 | 48.7 |
| CDY32286 | Canola | plasma membrane | 63.57 | 48.11 |
| Os08t0159100-01 | Rice | plasma membrane | 46.79 | 47.12 |
| Zm00001d047059_P004 | Maize | golgi, plasma membrane, vacuole | 51.79 | 44.89 |
| Zm00001d049526_P002 | Maize | golgi, plasma membrane, vacuole | 43.93 | 44.57 |
| VIT_12s0059g00180.t01 | Wine grape | golgi, mitochondrion, plasma membrane | 24.29 | 32.08 |
| VIT_00s0583g00020.t01 | Wine grape | plasma membrane | 23.21 | 30.81 |
| VIT_07s0005g04950.t01 | Wine grape | plasma membrane | 28.93 | 29.56 |
Protein Annotations
| EntrezGene:100245417 | wikigene:100245417 | MapMan:26.10.2.2 | ProteinID:CCB57938 | ProteinID:CCB57938.1 | UniProt:F6HTC8 |
| EMBL:FN596247 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005794 | GO:GO:0008150 | GO:GO:0009506 |
| GO:GO:0009705 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0043621 | GO:GO:0046786 |
| EntrezGene:LOC100245417 | wikigene:LOC100245417 | PFAM:PF00335 | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF268 | TIGR:TC54482 |
| TIGR:TC65223 | TMHMM:TMhelix | InterPro:Tetraspanin/Peripherin | UniParc:UPI00021082EF | ArrayExpress:VIT_02s0012g00560 | EnsemblPlantsGene:VIT_02s0012g00560 |
| EnsemblPlants:VIT_02s0012g00560.t01 | RefSeq:XP_002279170 | RefSeq:XP_002279170.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:-:6421750..6433390
Molecular Weight (calculated)
31261.2 Da
IEP (calculated)
4.618
GRAVY (calculated)
0.287
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRGCLECL LKILNFLLTL VGLAMVGYGI YLFVEYKKSS GETLTISPVM GDSDVIQLGR PVMMAVTLSS SILDNLPKAW FIYCFFAIGV ILFVISCFGC
101: VGAVTRNGCC LSCYAVLVIL LILIELGCAA FIFFDKSWED DIPTDKTGDF DMIYDFLKEN WKIVKWVALA AVILEALLFV LTLMVRAANK PDDYDSDDEF
201: IAQRQSVRQP LINRPPVAAT GVPVAGAIDQ RPSRNDAWST RMREKYGLDT SEFTYNPSES NRYPPGQQQP TEERSRCTIM
101: VGAVTRNGCC LSCYAVLVIL LILIELGCAA FIFFDKSWED DIPTDKTGDF DMIYDFLKEN WKIVKWVALA AVILEALLFV LTLMVRAANK PDDYDSDDEF
201: IAQRQSVRQP LINRPPVAAT GVPVAGAIDQ RPSRNDAWST RMREKYGLDT SEFTYNPSES NRYPPGQQQP TEERSRCTIM
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.