Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010162.1-P | Field mustard | plasma membrane | 90.36 | 90.68 |
| Bra023264.1-P | Field mustard | plasma membrane | 83.93 | 83.63 |
| CDX93836 | Canola | plasma membrane | 83.57 | 83.27 |
| CDY01278 | Canola | plasma membrane | 82.5 | 82.21 |
| CDY48874 | Canola | plasma membrane | 90.71 | 73.84 |
| KRH57584 | Soybean | plasma membrane | 60.0 | 69.42 |
| KRH04302 | Soybean | endoplasmic reticulum | 68.57 | 69.31 |
| CDY32286 | Canola | plasma membrane | 90.71 | 68.65 |
| Solyc08g077220.2.1 | Tomato | golgi, plasma membrane, vacuole | 68.93 | 67.96 |
| KRH77234 | Soybean | golgi, plasma membrane, vacuole | 66.79 | 66.08 |
| KRH28260 | Soybean | golgi, plasma membrane, vacuole | 65.71 | 65.02 |
| VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 63.93 | 63.93 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 26.07 | 57.48 |
| PGSC0003DMT400062233 | Potato | plasma membrane | 67.86 | 57.23 |
| GSMUA_Achr4P20930_001 | Banana | golgi, plasma membrane, vacuole | 56.79 | 56.18 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 56.43 | 55.83 |
| GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 55.71 | 54.93 |
| TraesCS1B01G148900.1 | Wheat | golgi, plasma membrane, vacuole | 54.64 | 53.68 |
| TraesCS1D01G133700.1 | Wheat | plasma membrane | 54.64 | 53.68 |
| TraesCS1A01G137700.2 | Wheat | plasma membrane | 54.29 | 53.33 |
| Os08t0282000-01 | Rice | plasma membrane | 53.93 | 53.17 |
| Zm00001d030014_P011 | Maize | plasma membrane | 52.86 | 53.05 |
| KXG38876 | Sorghum | plasma membrane | 52.5 | 52.69 |
| HORVU1Hr1G034980.1 | Barley | plasma membrane | 53.57 | 52.63 |
| GSMUA_Achr1P00640_001 | Banana | plasma membrane | 51.07 | 52.0 |
| TraesCS7A01G299900.1 | Wheat | plasma membrane | 49.29 | 51.3 |
| TraesCS7B01G187200.1 | Wheat | plasma membrane | 48.93 | 50.93 |
| HORVU7Hr1G070700.3 | Barley | vacuole | 48.93 | 50.93 |
| TraesCS7D01G294800.2 | Wheat | plasma membrane | 48.93 | 50.93 |
| Os08t0159100-01 | Rice | plasma membrane | 49.64 | 50.0 |
| EES13397 | Sorghum | plasma membrane | 48.93 | 50.0 |
| Zm00001d047059_P004 | Maize | golgi, plasma membrane, vacuole | 52.5 | 45.51 |
| Zm00001d049526_P002 | Maize | golgi, plasma membrane, vacuole | 42.14 | 42.75 |
| AT2G20740.1 | Thale cress | plasma membrane | 23.57 | 29.86 |
| AT2G20230.1 | Thale cress | plasma membrane | 28.57 | 29.63 |
| AT4G28770.2 | Thale cress | plasma membrane | 27.5 | 23.69 |
Protein Annotations
| MapMan:26.10.2.2 | EntrezGene:840133 | ProteinID:AAF81337.1 | EMBL:AB085684 | ProteinID:AEE31476.1 | ProteinID:AEE31477.1 |
| ProteinID:AEE31478.1 | EMBL:AF334723 | EMBL:AF385687 | EMBL:AK221090 | ArrayExpress:AT1G32400 | EnsemblPlantsGene:AT1G32400 |
| RefSeq:AT1G32400 | TAIR:AT1G32400 | RefSeq:AT1G32400-TAIR-G | EnsemblPlants:AT1G32400.3 | TAIR:AT1G32400.3 | EMBL:AY088560 |
| Unigene:At.15525 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009705 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0043621 |
| GO:GO:0046786 | RefSeq:NP_001031127.1 | RefSeq:NP_564399.1 | RefSeq:NP_973952.1 | PFAM:PF00335 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF268 | UniProt:Q9C5W7 |
| TMHMM:TMhelix | Symbol:TOM2A | InterPro:Tetraspanin/Peripherin | UniParc:UPI00000ABFFC | SEG:seg | : |
Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
Coordinates
chr1:-:11689103..11691465
Molecular Weight (calculated)
31557.3 Da
IEP (calculated)
5.100
GRAVY (calculated)
0.219
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.