Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 9
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G034980.1 | Barley | plasma membrane | 89.08 | 88.77 |
| TraesCS1A01G137700.2 | Wheat | plasma membrane | 88.73 | 88.42 |
| TraesCS1D01G133700.1 | Wheat | plasma membrane | 88.38 | 88.07 |
| TraesCS1B01G148900.1 | Wheat | golgi, plasma membrane, vacuole | 88.03 | 87.72 |
| Zm00001d030014_P011 | Maize | plasma membrane | 80.28 | 81.72 |
| KXG38876 | Sorghum | plasma membrane | 80.28 | 81.72 |
| Zm00001d047059_P004 | Maize | golgi, plasma membrane, vacuole | 78.87 | 69.35 |
| GSMUA_Achr4P20930_001 | Banana | golgi, plasma membrane, vacuole | 67.96 | 68.2 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 67.96 | 68.2 |
| GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 67.61 | 67.61 |
| GSMUA_Achr1P00640_001 | Banana | plasma membrane | 61.97 | 64.0 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 26.06 | 58.27 |
| Solyc08g077220.2.1 | Tomato | golgi, plasma membrane, vacuole | 56.69 | 56.69 |
| Bra010162.1-P | Field mustard | plasma membrane | 53.87 | 54.84 |
| CDX93836 | Canola | plasma membrane | 53.87 | 54.45 |
| Bra023264.1-P | Field mustard | plasma membrane | 53.87 | 54.45 |
| KRH04302 | Soybean | endoplasmic reticulum | 52.82 | 54.15 |
| AT1G32400.3 | Thale cress | plasma membrane | 53.17 | 53.93 |
| CDY01278 | Canola | plasma membrane | 52.82 | 53.38 |
| KRH77234 | Soybean | golgi, plasma membrane, vacuole | 53.17 | 53.36 |
| KRH28260 | Soybean | golgi, plasma membrane, vacuole | 52.46 | 52.65 |
| VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 51.41 | 52.14 |
| KRH57584 | Soybean | plasma membrane | 44.37 | 52.07 |
| Os08t0159100-01 | Rice | plasma membrane | 48.94 | 50.0 |
| PGSC0003DMT400062233 | Potato | plasma membrane | 56.34 | 48.19 |
| CDY48874 | Canola | plasma membrane | 53.87 | 44.48 |
| CDY32286 | Canola | plasma membrane | 54.23 | 41.62 |
| Os04t0679900-01 | Rice | mitochondrion, plasma membrane | 19.37 | 25.35 |
| Os06t0731400-02 | Rice | golgi, plasma membrane | 21.48 | 25.21 |
Protein Annotations
| EMBL:AK101411 | EnsemblPlants:Os08t0282000-01 | EnsemblPlantsGene:Os08g0282000 | EntrezGene:4345165 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF268 | PFAM:PF00335 | ProteinID:BAC99958.1 |
| ProteinID:BAF23358.1 | ProteinID:BAT04708.1 | RefSeq:XP_015650969.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00001D8E51 |
| UniProt:Q6YS19 | MapMan:26.10.2.2 | : | : | : | : |
Description
Tetraspanin domain containing protein. (Os08t0282000-01)
Coordinates
chr8:-:11055447..11062439
Molecular Weight (calculated)
31368.2 Da
IEP (calculated)
4.798
GRAVY (calculated)
0.355
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRGFFECL LKLLNFVLTV AGLAMVGYGI YLLVEWMRIS GGGGGAPPSP APPAELLMFG RPMLTAVALG DGGSFFDKLP KAWFIYLFIG VGAIIFVISL
101: FGCIGAATRN TCCLCCYAFL VILLILVEAG AAAFIFFDES WKDVIPVDKT ENFDVMYDFL KENWEIARWV ALGSVIFEVL LFLLALVVRA MNKPAEYDSD
201: DEIIATSRST SIRQPLIHSQ NVPATGVPVA TLEQRASRND AWSQRMREKY GLDTSQFTYN PSDPSRYQQN GAPPAEERNR CVIL
101: FGCIGAATRN TCCLCCYAFL VILLILVEAG AAAFIFFDES WKDVIPVDKT ENFDVMYDFL KENWEIARWV ALGSVIFEVL LFLLALVVRA MNKPAEYDSD
201: DEIIATSRST SIRQPLIHSQ NVPATGVPVA TLEQRASRND AWSQRMREKY GLDTSQFTYN PSDPSRYQQN GAPPAEERNR CVIL
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.