Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023264.1-P | Field mustard | plasma membrane | 99.29 | 99.29 |
| CDY01278 | Canola | plasma membrane | 97.51 | 97.51 |
| AT1G32400.3 | Thale cress | plasma membrane | 83.27 | 83.57 |
| CDY48874 | Canola | plasma membrane | 86.48 | 70.64 |
| KRH57584 | Soybean | plasma membrane | 58.01 | 67.36 |
| KRH77234 | Soybean | golgi, plasma membrane, vacuole | 67.62 | 67.14 |
| KRH28260 | Soybean | golgi, plasma membrane, vacuole | 67.26 | 66.78 |
| CDY32286 | Canola | plasma membrane | 87.19 | 66.22 |
| KRH04302 | Soybean | endoplasmic reticulum | 65.12 | 66.06 |
| Solyc08g077220.2.1 | Tomato | golgi, plasma membrane, vacuole | 64.41 | 63.73 |
| VIT_02s0012g00560.t01 | Wine grape | plasma membrane | 62.28 | 62.5 |
| KXG38876 | Sorghum | plasma membrane | 54.8 | 55.2 |
| Zm00001d030014_P011 | Maize | plasma membrane | 54.45 | 54.84 |
| GSMUA_Achr4P20930_001 | Banana | golgi, plasma membrane, vacuole | 54.8 | 54.42 |
| PGSC0003DMT400062233 | Potato | plasma membrane | 64.06 | 54.22 |
| Os08t0282000-01 | Rice | plasma membrane | 54.45 | 53.87 |
| TraesCS1D01G133700.1 | Wheat | plasma membrane | 54.45 | 53.68 |
| TraesCS1A01G137700.2 | Wheat | plasma membrane | 54.45 | 53.68 |
| TraesCS1B01G148900.1 | Wheat | golgi, plasma membrane, vacuole | 54.09 | 53.33 |
| HORVU1Hr1G034980.1 | Barley | plasma membrane | 53.74 | 52.98 |
| TraesCS7A01G299900.1 | Wheat | plasma membrane | 50.53 | 52.79 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 53.02 | 52.65 |
| TraesCS7D01G294800.2 | Wheat | plasma membrane | 50.18 | 52.42 |
| TraesCS7B01G187200.1 | Wheat | plasma membrane | 50.18 | 52.42 |
| HORVU7Hr1G070700.3 | Barley | vacuole | 50.18 | 52.42 |
| GSMUA_Achr4P26390_001 | Banana | golgi, plasma membrane, vacuole | 52.67 | 52.11 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 23.49 | 51.97 |
| GSMUA_Achr1P00640_001 | Banana | plasma membrane | 49.47 | 50.55 |
| Os08t0159100-01 | Rice | plasma membrane | 49.47 | 50.0 |
| EES13397 | Sorghum | plasma membrane | 48.4 | 49.63 |
| Zm00001d047059_P004 | Maize | golgi, plasma membrane, vacuole | 54.09 | 47.06 |
| Zm00001d049526_P002 | Maize | golgi, plasma membrane, vacuole | 41.28 | 42.03 |
| CDY31986 | Canola | plasma membrane | 28.11 | 29.59 |
| CDY31941 | Canola | plasma membrane | 22.42 | 29.44 |
| CDY05788 | Canola | plasma membrane | 22.06 | 28.97 |
| CDY65849 | Canola | plasma membrane | 27.05 | 28.25 |
| CDY06872 | Canola | plasma membrane | 26.69 | 27.47 |
| CDY35218 | Canola | plasma membrane | 26.33 | 27.11 |
Protein Annotations
| EnsemblPlants:CDX93836 | EnsemblPlantsGene:GSBRNA2T00156624001 | GO:A0A078DX13 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tetraspanin/Peripherin | PANTHER:PTHR19282 | PANTHER:PTHR19282:SF268 | PFAM:PF00335 | ProteinID:CDX93836 | ProteinID:CDX93836.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF4112 | MapMan:26.10.2.2 | : | : |
Description
BnaA09g24360D
Coordinates
chrLK031877:+:1383347..1385540
Molecular Weight (calculated)
31591.3 Da
IEP (calculated)
5.745
GRAVY (calculated)
0.220
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRGCLECL LKLLNFILAV AGLSIIGYGI YLFVEFKRAT DHSVSFIPTN VNDQSYVSFG RPMLMAVALS SNVFDNLPKA WFIYLFIGIG VVLFVTSCCG
101: CVGTCSRSIC CLSCYSLLLI LLILAELGAA AFIFFDNSWR DQIPSDKTGN FDTIYHFLKE NWNIVRWVAL GAVVFEALLF LLALMVRAAN TPDEYDSDDE
201: FIAPPRQIRQ PFINRQPAPV TGVPVAPTLD QRPSRSDPWS ARMREKYGLD TSEFTYNPSE SHRFQQMPTQ PNEEKGRCTI M
101: CVGTCSRSIC CLSCYSLLLI LLILAELGAA AFIFFDNSWR DQIPSDKTGN FDTIYHFLKE NWNIVRWVAL GAVVFEALLF LLALMVRAAN TPDEYDSDDE
201: FIAPPRQIRQ PFINRQPAPV TGVPVAPTLD QRPSRSDPWS ARMREKYGLD TSEFTYNPSE SHRFQQMPTQ PNEEKGRCTI M
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
Arabidopsis Description
TOM2ATobamovirus multiplication protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.