CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65849	Canola	plasma membrane	90.26	89.59
AT2G20230.1	Thale cress	plasma membrane	74.53	73.7
CDY06872	Canola	plasma membrane	68.54	67.03
CDY35218	Canola	plasma membrane	65.54	64.1
KRH32282	Soybean	plasma membrane	46.82	51.23
KRH19680	Soybean	plasma membrane	46.82	51.02
GSMUA_Achr7P06690_001	Banana	plasma membrane	30.71	50.62
VIT_07s0005g04950.t01	Wine grape	plasma membrane	51.69	50.37
GSMUA_Achr2P17910_001	Banana	plasma membrane	24.34	44.83
PGSC0003DMT400048750	Potato	plasma membrane	43.45	44.79
Solyc09g063070.2.1	Tomato	plasma membrane	43.07	44.4
Zm00001d028780_P001	Maize	extracellular, plasma membrane	30.71	40.59
TraesCS3D01G457500.3	Wheat	golgi, plasma membrane	34.83	37.8
Os06t0731400-02	Rice	golgi, plasma membrane	33.71	37.19
TraesCS3A01G463600.1	Wheat	extracellular, mitochondrion, plasma membrane, plastid	33.71	36.59
TraesCS3B01G506800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	33.71	36.59
EER89022	Sorghum	extracellular, plasma membrane	34.08	36.26
TraesCS7B01G360600.1	Wheat	plasma membrane	32.58	35.08
TraesCS7B01G360400.1	Wheat	plasma membrane	32.58	35.08
TraesCS7D01G447700.1	Wheat	plasma membrane	32.58	34.39
CDY31941	Canola	plasma membrane	25.84	32.24
CDY05788	Canola	plasma membrane	25.84	32.24
HORVU7Hr1G105880.1	Barley	plastid	34.08	30.33
CDX93836	Canola	plasma membrane	29.59	28.11
CDY01278	Canola	plasma membrane	28.84	27.4
CDY48874	Canola	plasma membrane	29.96	23.26
CDY32286	Canola	plasma membrane	30.34	21.89

Protein Annotations

EnsemblPlants:CDY31986	EnsemblPlantsGene:GSBRNA2T00050796001	GO:A0A078H2F9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR19282	PANTHER:PTHR19282:SF227	ProteinID:CDY31986	ProteinID:CDY31986.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEF615	UniProt:A0A078H2F9	MapMan:35.1	:	:	:

Description

BnaA07g00090DBnaA07g00090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2F9]

Coordinates

chrLK032283:-:404996..406993

Molecular Weight (calculated)

29361.6 Da

IEP (calculated)

5.932

GRAVY (calculated)

0.254

Length

267 amino acids

Sequence
(BLAST)

001: MRHNCCHLSF ASTLKILNFV QAFFGVSIII YSIWMLDQYH RHVPVDPPTS SSGLGIAKVS EPLNNPPALM ASVVLGSSGG DHHGFNLRSL DLPAPWFIYS
101: FMAVGVLVCI VTIIGFIAAE AINGCCLCFY SILKTLLILL EAALVAFIAI DRQWEKDLPY DPTGELNSLR AFIEDNIDIC KWVGAAVVVV QLLSLLLAMV
201: LRAMVSPKRP ELDDEEDFEN PRSRAWDPLL GSQANQASAG PSKSENWSSR IREKYGLNQS QAVNPKG

Best Arabidopsis Sequence Match ( AT2G20230.1 )
(BLAST)

001: MRRNCCHVSF ASTLKILNFV QAFIGVSIII YSIWMLHEYS RHLPVDPPPS ASSSSGTEIA TSVSEPLKNP IDFVASIILG SNGGDHGFNL RSLDLPAPWF
101: IYSFMAVGIL VCIVTFIGFI AAEAINGCCL CFYSILKTLL ILLEAALVAY IAIDRHWEKD LPYDPTGELS SLRAFIEENI DICKWVGIAV VAVQLLSLLL
201: AMVLRAMVST PKPELDEEED DENPRSRTWD PLLGPQGNQA PAGSSKIENW SSRIREKYGL NQSPPVNPKG

Arabidopsis Description

TOM2AH2Tetraspanin-18 [Source:UniProtKB/Swiss-Prot;Acc:Q93XY5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.