Factsheet for Zm00001d028780_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89022	Sorghum	extracellular, plasma membrane	82.18	66.14
Os06t0731400-02	Rice	golgi, plasma membrane	68.32	57.02
TraesCS3D01G457500.3	Wheat	golgi, plasma membrane	67.82	55.69
TraesCS3A01G463600.1	Wheat	extracellular, mitochondrion, plasma membrane, plastid	66.83	54.88
TraesCS3B01G506800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	66.34	54.47
TraesCS7B01G360600.1	Wheat	plasma membrane	66.34	54.03
TraesCS7B01G360400.1	Wheat	plasma membrane	66.34	54.03
TraesCS7D01G447700.1	Wheat	plasma membrane	65.84	52.57
HORVU7Hr1G105880.1	Barley	plastid	66.34	44.67
GSMUA_Achr7P06690_001	Banana	plasma membrane	35.15	43.83
GSMUA_Achr2P17910_001	Banana	plasma membrane	26.73	37.24
AT2G20230.1	Thale cress	plasma membrane	41.09	30.74
CDY31986	Canola	plasma membrane	40.59	30.71
PGSC0003DMT400048750	Potato	plasma membrane	39.11	30.5
Solyc09g063070.2.1	Tomato	plasma membrane	39.11	30.5
CDY65849	Canola	plasma membrane	40.59	30.48
CDY35218	Canola	plasma membrane	41.09	30.4
VIT_07s0005g04950.t01	Wine grape	plasma membrane	41.09	30.29
KRH19680	Soybean	plasma membrane	36.63	30.2
CDY06872	Canola	plasma membrane	40.59	30.04
KRH32282	Soybean	plasma membrane	35.64	29.51
Bra011059.1-P	Field mustard	plasma membrane	39.6	29.3
Zm00001d001811_P001	Maize	plasma membrane	28.71	26.85
Zm00001d026634_P002	Maize	mitochondrion	28.22	25.91
AT4G28770.2	Thale cress	plasma membrane	38.12	23.69
Zm00001d049526_P002	Maize	golgi, plasma membrane, vacuole	22.77	16.67
Zm00001d030014_P011	Maize	plasma membrane	21.29	15.41
Zm00001d047059_P004	Maize	golgi, plasma membrane, vacuole	22.28	13.93

Protein Annotations

EnsemblPlants:Zm00001d028780_P001	EnsemblPlants:Zm00001d028780_T001	EnsemblPlantsGene:Zm00001d028780	EntrezGene:100191953	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR19282	PANTHER:PTHR19282:SF227	ProteinID:ONL97025.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000221CBEE	UniProt:A0A1D6JZL6	MapMan:35.1	:	:	:

Description

Tetraspanin-18

Coordinates

chr1:-:46200328..46201633

Molecular Weight (calculated)

22608.1 Da

IEP (calculated)

7.135

GRAVY (calculated)

0.572

Length

202 amino acids

Sequence
(BLAST)

001: MVRRQSREGR GLGWPACCLG FLLKLLAFLQ AFAAVSALIY AAWILSRWAR HHQLHLRDLL SPDLWFPSLV MAAGIFYCLL LLAGYLAAEI NTGCCLCFYT
101: IPAMAMMLLE AALAAHLALN QHWIQELPED RTGELHNLLS FIHNNLDLCK WAALAIFATQ ALSLLLAMTL RAMLSARTMD YDSDEDFVVI RRPLLVAQPP
201: AP

Best Arabidopsis Sequence Match ( AT2G20230.1 )
(BLAST)

001: MRRNCCHVSF ASTLKILNFV QAFIGVSIII YSIWMLHEYS RHLPVDPPPS ASSSSGTEIA TSVSEPLKNP IDFVASIILG SNGGDHGFNL RSLDLPAPWF
101: IYSFMAVGIL VCIVTFIGFI AAEAINGCCL CFYSILKTLL ILLEAALVAY IAIDRHWEKD LPYDPTGELS SLRAFIEENI DICKWVGIAV VAVQLLSLLL
201: AMVLRAMVST PKPELDEEED DENPRSRTWD PLLGPQGNQA PAGSSKIENW SSRIREKYGL NQSPPVNPKG

Arabidopsis Description

TOM2AH2Tetraspanin-18 [Source:UniProtKB/Swiss-Prot;Acc:Q93XY5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.