Factsheet for TraesCS3D01G457500.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G463600.1	Wheat	extracellular, mitochondrion, plasma membrane, plastid	94.72	94.72
TraesCS3B01G506800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	94.31	94.31
TraesCS7D01G447700.1	Wheat	plasma membrane	82.93	80.63
Os06t0731400-02	Rice	golgi, plasma membrane	73.17	74.38
Zm00001d028780_P001	Maize	extracellular, plasma membrane	55.69	67.82
EER89022	Sorghum	extracellular, plasma membrane	67.89	66.53
HORVU7Hr1G105880.1	Barley	plastid	79.27	65.0
GSMUA_Achr2P17910_001	Banana	plasma membrane	29.67	50.34
GSMUA_Achr7P06690_001	Banana	plasma membrane	31.3	47.53
KRH19680	Soybean	plasma membrane	37.8	37.96
KRH32282	Soybean	plasma membrane	36.59	36.89
PGSC0003DMT400048750	Potato	plasma membrane	38.21	36.29
Solyc09g063070.2.1	Tomato	plasma membrane	37.8	35.91
CDY31986	Canola	plasma membrane	37.8	34.83
VIT_07s0005g04950.t01	Wine grape	plasma membrane	38.21	34.31
CDY65849	Canola	plasma membrane	36.99	33.83
AT2G20230.1	Thale cress	plasma membrane	36.99	33.7
CDY35218	Canola	plasma membrane	37.4	33.7
CDY06872	Canola	plasma membrane	37.4	33.7
Bra011059.1-P	Field mustard	plasma membrane	37.4	33.7
AT4G28770.2	Thale cress	plasma membrane	36.59	27.69
TraesCS7D01G294800.2	Wheat	plasma membrane	24.8	22.68
TraesCS1D01G133700.1	Wheat	plasma membrane	24.8	21.4

Protein Annotations

EnsemblPlants:TraesCS3D01G457500.3	EnsemblPlantsGene:TraesCS3D01G457500	PANTHER:PTHR19282	PANTHER:PTHR19282:SF227	SEG:seg	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:562706593..562709285

Molecular Weight (calculated)

26666.5 Da

IEP (calculated)

6.912

GRAVY (calculated)

0.353

Length

246 amino acids

Sequence
(BLAST)

001: MARGGRSEKG GGGCGRCCLG FLLKLLAFLQ AFAALSAVLY AASILSRWAR HHELHIHHLL PDLWFACAVM AAGLLYCAIL LAGYVAAEIS SGCCLCFYTG
101: LAMVMMLLEA AVAGRILLNE HWIQDLPYDR TGELQNLVSF VHDNLDLCKW AALATVATQA LSLLLAMVLR AMVSPTSSDY DSDEDFVVIR RPLLIAQGAP
201: SYLPTTADPR GVHPNLWSSS MRQKYGLNSS GDYTYNTLGQ NAAPPQ

Best Arabidopsis Sequence Match ( AT4G28770.2 )
(BLAST)

001: MSSSEYILSV KTTFFCFVRN HQRLFLRRSL LRSLISISRI VIEKMRHNCC HVSFASILKI LNFLQAFIGI SIIIYSIWML DQYNHHVPVD PPPSQPPAAS
101: SPDSSYSFSN SIIEINSVSD SLKNPIDFVS GIVLGSGGGD SGFNLRSLDL PAPWFIYCFM AIGILVCIVT IIGFIAAEAI NGCCLCFYSI LKTLLIIIEA
201: ALVGFIVIDR HWEKDLPYDP TGELNSLRAF IEENIDICKW VGIVVVAIQL LSLLLALVLR AMVSPRQSEL DDEDDFENPM SRARDNLLGP QANQTSSGSS
301: NIDNWRSRIR EKYGLINSQS HTPSA

Arabidopsis Description

Tetraspanin family protein [Source:UniProtKB/TrEMBL;Acc:F4JM26]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.